Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09195 and ABID97_RS09200 are separated by 229 nucleotides ABID97_RS09200 and ABID97_RS09205 are separated by 16 nucleotides ABID97_RS09205 and ABID97_RS09210 are separated by 113 nucleotides
ABID97_RS09195: ABID97_RS09195 - D-amino acid dehydrogenase, at 1,934,397 to 1,935,617
_RS09195
ABID97_RS09200: ABID97_RS09200 - transporter substrate-binding domain-containing protein, at 1,935,847 to 1,936,734
_RS09200
ABID97_RS09205: ABID97_RS09205 - amino acid racemase, at 1,936,751 to 1,937,491
_RS09205
ABID97_RS09210: ABID97_RS09210 - dienelactone hydrolase family protein, at 1,937,605 to 1,938,504
_RS09210
Position (kb) 1935
1936
1937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1935.049 kb on + strand, within ABID97_RS09195 at 1935.050 kb on - strand, within ABID97_RS09195 at 1935.199 kb on + strand, within ABID97_RS09195 at 1935.469 kb on + strand, within ABID97_RS09195 at 1935.469 kb on + strand, within ABID97_RS09195 at 1935.470 kb on - strand, within ABID97_RS09195 at 1935.475 kb on + strand, within ABID97_RS09195 at 1935.476 kb on - strand, within ABID97_RS09195 at 1935.660 kb on + strand at 1935.806 kb on + strand at 1935.989 kb on - strand, within ABID97_RS09200 at 1936.219 kb on + strand, within ABID97_RS09200 at 1936.336 kb on + strand, within ABID97_RS09200 at 1936.336 kb on + strand, within ABID97_RS09200 at 1936.337 kb on - strand, within ABID97_RS09200 at 1936.337 kb on - strand, within ABID97_RS09200 at 1936.621 kb on + strand, within ABID97_RS09200 at 1936.621 kb on + strand, within ABID97_RS09200 at 1936.621 kb on + strand, within ABID97_RS09200 at 1936.745 kb on + strand at 1936.745 kb on + strand at 1936.746 kb on - strand at 1936.746 kb on - strand at 1937.174 kb on + strand, within ABID97_RS09205 at 1937.174 kb on + strand, within ABID97_RS09205 at 1937.541 kb on + strand at 1937.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 1,935,049 + ABID97_RS09195 0.53 +0.2 1,935,050 - ABID97_RS09195 0.53 -0.1 1,935,199 + ABID97_RS09195 0.66 -0.4 1,935,469 + ABID97_RS09195 0.88 +2.1 1,935,469 + ABID97_RS09195 0.88 +0.1 1,935,470 - ABID97_RS09195 0.88 -0.2 1,935,475 + ABID97_RS09195 0.88 +0.3 1,935,476 - ABID97_RS09195 0.88 -0.3 1,935,660 + +0.3 1,935,806 + -3.3 1,935,989 - ABID97_RS09200 0.16 +1.2 1,936,219 + ABID97_RS09200 0.42 -0.1 1,936,336 + ABID97_RS09200 0.55 -0.1 1,936,336 + ABID97_RS09200 0.55 -0.3 1,936,337 - ABID97_RS09200 0.55 -0.6 1,936,337 - ABID97_RS09200 0.55 -0.3 1,936,621 + ABID97_RS09200 0.87 -1.4 1,936,621 + ABID97_RS09200 0.87 -0.1 1,936,621 + ABID97_RS09200 0.87 +0.9 1,936,745 + -3.0 1,936,745 + -0.4 1,936,746 - +0.3 1,936,746 - -0.7 1,937,174 + ABID97_RS09205 0.57 -0.4 1,937,174 + ABID97_RS09205 0.57 -0.9 1,937,541 + -1.2 1,937,542 - -0.3
Or see this region's nucleotide sequence