Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07305

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS07295 and ABID97_RS07300 overlap by 4 nucleotidesABID97_RS07300 and ABID97_RS07305 are separated by 72 nucleotidesABID97_RS07305 and ABID97_RS07310 are separated by 2 nucleotidesABID97_RS07310 and ABID97_RS07315 are separated by 56 nucleotides ABID97_RS07295: ABID97_RS07295 - dihydroneopterin triphosphate diphosphatase, at 1,547,943 to 1,548,416 _RS07295 ABID97_RS07300: ABID97_RS07300 - endonuclease/exonuclease/phosphatase family protein, at 1,548,413 to 1,549,168 _RS07300 ABID97_RS07305: ABID97_RS07305 - GTP cyclohydrolase I, at 1,549,241 to 1,549,972 _RS07305 ABID97_RS07310: ABID97_RS07310 - BLUF domain-containing protein, at 1,549,975 to 1,550,397 _RS07310 ABID97_RS07315: ABID97_RS07315 - DMT family transporter, at 1,550,454 to 1,551,335 _RS07315 Position (kb) 1549 1550Strain fitness (log2 ratio) -1 0 1at 1548.449 kb on + strandat 1548.450 kb on - strandat 1548.450 kb on - strandat 1548.644 kb on + strand, within ABID97_RS07300at 1548.645 kb on - strand, within ABID97_RS07300at 1548.645 kb on - strand, within ABID97_RS07300at 1548.657 kb on - strand, within ABID97_RS07300at 1548.657 kb on - strand, within ABID97_RS07300at 1549.022 kb on + strand, within ABID97_RS07300at 1549.023 kb on - strand, within ABID97_RS07300at 1549.229 kb on + strandat 1549.229 kb on + strandat 1549.229 kb on + strandat 1549.230 kb on - strandat 1549.993 kb on + strandat 1549.993 kb on + strandat 1550.095 kb on + strand, within ABID97_RS07310at 1550.096 kb on - strand, within ABID97_RS07310at 1550.155 kb on + strand, within ABID97_RS07310at 1550.155 kb on + strand, within ABID97_RS07310at 1550.155 kb on + strand, within ABID97_RS07310at 1550.155 kb on + strand, within ABID97_RS07310at 1550.155 kb on + strand, within ABID97_RS07310at 1550.155 kb on + strand, within ABID97_RS07310at 1550.156 kb on - strand, within ABID97_RS07310at 1550.156 kb on - strand, within ABID97_RS07310at 1550.156 kb on - strand, within ABID97_RS07310at 1550.156 kb on - strand, within ABID97_RS07310at 1550.206 kb on + strand, within ABID97_RS07310at 1550.206 kb on + strand, within ABID97_RS07310at 1550.293 kb on + strand, within ABID97_RS07310at 1550.293 kb on + strand, within ABID97_RS07310at 1550.294 kb on - strand, within ABID97_RS07310at 1550.682 kb on + strand, within ABID97_RS07315at 1550.682 kb on + strand, within ABID97_RS07315at 1550.682 kb on + strand, within ABID97_RS07315at 1550.682 kb on + strand, within ABID97_RS07315at 1550.682 kb on + strand, within ABID97_RS07315at 1550.682 kb on + strand, within ABID97_RS07315at 1550.682 kb on + strand, within ABID97_RS07315at 1550.682 kb on + strand, within ABID97_RS07315at 1550.683 kb on - strand, within ABID97_RS07315at 1550.683 kb on - strand, within ABID97_RS07315at 1550.683 kb on - strand, within ABID97_RS07315at 1550.683 kb on - strand, within ABID97_RS07315at 1550.685 kb on + strand, within ABID97_RS07315at 1550.685 kb on + strand, within ABID97_RS07315at 1550.685 kb on + strand, within ABID97_RS07315at 1550.686 kb on - strand, within ABID97_RS07315at 1550.733 kb on + strand, within ABID97_RS07315at 1550.932 kb on - strand, within ABID97_RS07315at 1550.932 kb on - strand, within ABID97_RS07315at 1550.964 kb on + strand, within ABID97_RS07315at 1550.965 kb on - strand, within ABID97_RS07315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
1,548,449 + +0.1
1,548,450 - -0.2
1,548,450 - -1.4
1,548,644 + ABID97_RS07300 0.31 +0.4
1,548,645 - ABID97_RS07300 0.31 +0.9
1,548,645 - ABID97_RS07300 0.31 +0.2
1,548,657 - ABID97_RS07300 0.32 -0.1
1,548,657 - ABID97_RS07300 0.32 +0.4
1,549,022 + ABID97_RS07300 0.81 -0.1
1,549,023 - ABID97_RS07300 0.81 +1.4
1,549,229 + +0.2
1,549,229 + -0.1
1,549,229 + +1.0
1,549,230 - +1.2
1,549,993 + -0.5
1,549,993 + -0.0
1,550,095 + ABID97_RS07310 0.28 -0.1
1,550,096 - ABID97_RS07310 0.29 +0.1
1,550,155 + ABID97_RS07310 0.43 -1.3
1,550,155 + ABID97_RS07310 0.43 -0.3
1,550,155 + ABID97_RS07310 0.43 +0.2
1,550,155 + ABID97_RS07310 0.43 -1.0
1,550,155 + ABID97_RS07310 0.43 -0.0
1,550,155 + ABID97_RS07310 0.43 -1.6
1,550,156 - ABID97_RS07310 0.43 +0.0
1,550,156 - ABID97_RS07310 0.43 -0.6
1,550,156 - ABID97_RS07310 0.43 +0.8
1,550,156 - ABID97_RS07310 0.43 +0.4
1,550,206 + ABID97_RS07310 0.55 -1.0
1,550,206 + ABID97_RS07310 0.55 -0.7
1,550,293 + ABID97_RS07310 0.75 +0.3
1,550,293 + ABID97_RS07310 0.75 -0.5
1,550,294 - ABID97_RS07310 0.75 +0.6
1,550,682 + ABID97_RS07315 0.26 -0.2
1,550,682 + ABID97_RS07315 0.26 +0.1
1,550,682 + ABID97_RS07315 0.26 +0.3
1,550,682 + ABID97_RS07315 0.26 -1.2
1,550,682 + ABID97_RS07315 0.26 +0.2
1,550,682 + ABID97_RS07315 0.26 -0.3
1,550,682 + ABID97_RS07315 0.26 -0.6
1,550,682 + ABID97_RS07315 0.26 +0.7
1,550,683 - ABID97_RS07315 0.26 +1.7
1,550,683 - ABID97_RS07315 0.26 +0.1
1,550,683 - ABID97_RS07315 0.26 -0.1
1,550,683 - ABID97_RS07315 0.26 +0.3
1,550,685 + ABID97_RS07315 0.26 +0.0
1,550,685 + ABID97_RS07315 0.26 -0.4
1,550,685 + ABID97_RS07315 0.26 -0.2
1,550,686 - ABID97_RS07315 0.26 +0.4
1,550,733 + ABID97_RS07315 0.32 +1.1
1,550,932 - ABID97_RS07315 0.54 +0.2
1,550,932 - ABID97_RS07315 0.54 -0.3
1,550,964 + ABID97_RS07315 0.58 +0.2
1,550,965 - ABID97_RS07315 0.58 +0.2

Or see this region's nucleotide sequence