Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05235 and ABID97_RS05240 are separated by 79 nucleotides ABID97_RS05240 and ABID97_RS05245 are separated by 15 nucleotides ABID97_RS05245 and ABID97_RS05250 are separated by 326 nucleotides
ABID97_RS05235: ABID97_RS05235 - PA2169 family four-helix-bundle protein, at 1,098,837 to 1,099,316
_RS05235
ABID97_RS05240: ABID97_RS05240 - phosphoglycolate phosphatase, at 1,099,396 to 1,100,112
_RS05240
ABID97_RS05245: ABID97_RS05245 - chalcone isomerase family protein, at 1,100,128 to 1,100,733
_RS05245
ABID97_RS05250: ABID97_RS05250 - anthranilate synthase component I, at 1,101,060 to 1,102,562
_RS05250
Position (kb) 1100
1101 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1099.314 kb on + strand at 1099.315 kb on - strand at 1099.315 kb on - strand at 1099.393 kb on + strand at 1099.393 kb on + strand at 1099.681 kb on + strand, within ABID97_RS05240 at 1099.682 kb on - strand, within ABID97_RS05240 at 1099.693 kb on + strand, within ABID97_RS05240 at 1099.693 kb on + strand, within ABID97_RS05240 at 1099.693 kb on + strand, within ABID97_RS05240 at 1099.694 kb on - strand, within ABID97_RS05240 at 1099.694 kb on - strand, within ABID97_RS05240 at 1099.726 kb on + strand, within ABID97_RS05240 at 1100.525 kb on + strand, within ABID97_RS05245 at 1100.525 kb on + strand, within ABID97_RS05245 at 1100.526 kb on - strand, within ABID97_RS05245 at 1100.526 kb on - strand, within ABID97_RS05245 at 1100.526 kb on - strand, within ABID97_RS05245 at 1100.526 kb on - strand, within ABID97_RS05245 at 1100.541 kb on - strand, within ABID97_RS05245 at 1100.926 kb on + strand at 1100.926 kb on + strand at 1100.926 kb on + strand at 1100.926 kb on + strand at 1100.926 kb on + strand at 1100.926 kb on + strand at 1100.927 kb on - strand at 1100.927 kb on - strand at 1100.927 kb on - strand at 1101.102 kb on + strand at 1101.102 kb on + strand at 1101.102 kb on + strand at 1101.381 kb on + strand, within ABID97_RS05250 at 1101.382 kb on - strand, within ABID97_RS05250 at 1101.447 kb on + strand, within ABID97_RS05250 at 1101.585 kb on + strand, within ABID97_RS05250 at 1101.586 kb on - strand, within ABID97_RS05250 at 1101.598 kb on - strand, within ABID97_RS05250 at 1101.598 kb on - strand, within ABID97_RS05250
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 1,099,314 + -0.5 1,099,315 - -0.3 1,099,315 - -0.1 1,099,393 + -0.1 1,099,393 + +0.9 1,099,681 + ABID97_RS05240 0.40 -0.2 1,099,682 - ABID97_RS05240 0.40 -1.5 1,099,693 + ABID97_RS05240 0.41 +0.1 1,099,693 + ABID97_RS05240 0.41 -0.0 1,099,693 + ABID97_RS05240 0.41 -1.0 1,099,694 - ABID97_RS05240 0.42 -0.4 1,099,694 - ABID97_RS05240 0.42 -2.5 1,099,726 + ABID97_RS05240 0.46 -2.0 1,100,525 + ABID97_RS05245 0.66 -1.5 1,100,525 + ABID97_RS05245 0.66 +0.1 1,100,526 - ABID97_RS05245 0.66 -0.1 1,100,526 - ABID97_RS05245 0.66 -0.5 1,100,526 - ABID97_RS05245 0.66 +0.5 1,100,526 - ABID97_RS05245 0.66 +0.3 1,100,541 - ABID97_RS05245 0.68 -1.3 1,100,926 + +0.9 1,100,926 + +1.9 1,100,926 + -0.0 1,100,926 + -1.8 1,100,926 + -1.6 1,100,926 + +0.8 1,100,927 - -0.2 1,100,927 - -2.7 1,100,927 - -2.3 1,101,102 + -4.3 1,101,102 + -0.6 1,101,102 + -1.3 1,101,381 + ABID97_RS05250 0.21 -2.9 1,101,382 - ABID97_RS05250 0.21 -2.5 1,101,447 + ABID97_RS05250 0.26 -3.9 1,101,585 + ABID97_RS05250 0.35 -3.9 1,101,586 - ABID97_RS05250 0.35 -4.3 1,101,598 - ABID97_RS05250 0.36 -3.2 1,101,598 - ABID97_RS05250 0.36 -3.4
Or see this region's nucleotide sequence