Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03190 and ABID97_RS03195 are separated by 68 nucleotides ABID97_RS03195 and ABID97_RS03200 are separated by 62 nucleotides
ABID97_RS03190: ABID97_RS03190 - 2OG-Fe(II) oxygenase, at 647,428 to 648,144
_RS03190
ABID97_RS03195: ABID97_RS03195 - phage holin family protein, at 648,213 to 648,617
_RS03195
ABID97_RS03200: ABID97_RS03200 - LysR substrate-binding domain-containing protein, at 648,680 to 649,600
_RS03200
Position (kb) 648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 647.269 kb on + strand at 647.269 kb on + strand at 647.270 kb on - strand at 647.461 kb on - strand at 647.513 kb on + strand, within ABID97_RS03190 at 647.674 kb on + strand, within ABID97_RS03190 at 647.674 kb on + strand, within ABID97_RS03190 at 647.674 kb on + strand, within ABID97_RS03190 at 647.708 kb on + strand, within ABID97_RS03190 at 647.708 kb on + strand, within ABID97_RS03190 at 647.708 kb on + strand, within ABID97_RS03190 at 647.709 kb on - strand, within ABID97_RS03190 at 647.732 kb on + strand, within ABID97_RS03190 at 647.804 kb on + strand, within ABID97_RS03190 at 648.008 kb on + strand, within ABID97_RS03190 at 648.009 kb on - strand, within ABID97_RS03190 at 648.206 kb on + strand at 648.206 kb on + strand at 648.667 kb on + strand at 648.667 kb on + strand at 648.668 kb on - strand at 648.772 kb on - strand, within ABID97_RS03200 at 648.772 kb on - strand, within ABID97_RS03200 at 648.774 kb on + strand, within ABID97_RS03200 at 648.774 kb on + strand, within ABID97_RS03200 at 648.774 kb on + strand, within ABID97_RS03200 at 648.774 kb on + strand, within ABID97_RS03200 at 648.775 kb on - strand, within ABID97_RS03200 at 648.775 kb on - strand, within ABID97_RS03200 at 648.775 kb on - strand, within ABID97_RS03200 at 648.866 kb on + strand, within ABID97_RS03200 at 649.161 kb on + strand, within ABID97_RS03200 at 649.396 kb on - strand, within ABID97_RS03200 at 649.533 kb on + strand at 649.534 kb on - strand at 649.534 kb on - strand at 649.602 kb on + strand at 649.602 kb on + strand at 649.602 kb on + strand at 649.603 kb on - strand at 649.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 647,269 + +0.4 647,269 + -0.8 647,270 - +0.7 647,461 - +0.3 647,513 + ABID97_RS03190 0.12 +0.0 647,674 + ABID97_RS03190 0.34 -0.2 647,674 + ABID97_RS03190 0.34 -0.7 647,674 + ABID97_RS03190 0.34 +0.1 647,708 + ABID97_RS03190 0.39 -0.2 647,708 + ABID97_RS03190 0.39 +0.0 647,708 + ABID97_RS03190 0.39 -2.1 647,709 - ABID97_RS03190 0.39 -1.1 647,732 + ABID97_RS03190 0.42 -3.3 647,804 + ABID97_RS03190 0.52 +0.0 648,008 + ABID97_RS03190 0.81 -0.7 648,009 - ABID97_RS03190 0.81 -0.3 648,206 + -0.8 648,206 + +1.5 648,667 + -2.7 648,667 + +0.6 648,668 - -0.9 648,772 - ABID97_RS03200 0.10 -0.8 648,772 - ABID97_RS03200 0.10 +0.4 648,774 + ABID97_RS03200 0.10 -2.1 648,774 + ABID97_RS03200 0.10 +0.0 648,774 + ABID97_RS03200 0.10 -0.3 648,774 + ABID97_RS03200 0.10 -0.9 648,775 - ABID97_RS03200 0.10 +0.4 648,775 - ABID97_RS03200 0.10 +0.1 648,775 - ABID97_RS03200 0.10 -0.2 648,866 + ABID97_RS03200 0.20 -1.7 649,161 + ABID97_RS03200 0.52 -0.0 649,396 - ABID97_RS03200 0.78 +1.1 649,533 + +0.5 649,534 - -0.5 649,534 - -0.8 649,602 + -0.6 649,602 + -0.5 649,602 + -0.8 649,603 - -0.2 649,615 + +0.4
Or see this region's nucleotide sequence