Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01725

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS01720 and ABID97_RS01725 are separated by 62 nucleotidesABID97_RS01725 and ABID97_RS01730 are separated by 25 nucleotides ABID97_RS01720: ABID97_RS01720 - HipA domain-containing protein, at 337,203 to 338,483 _RS01720 ABID97_RS01725: ABID97_RS01725 - META domain-containing protein, at 338,546 to 338,986 _RS01725 ABID97_RS01730: ABID97_RS01730 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 339,012 to 339,917 _RS01730 Position (kb) 338 339Strain fitness (log2 ratio) -2 -1 0 1at 337.716 kb on + strand, within ABID97_RS01720at 337.983 kb on + strand, within ABID97_RS01720at 337.983 kb on + strand, within ABID97_RS01720at 337.983 kb on + strand, within ABID97_RS01720at 338.001 kb on + strand, within ABID97_RS01720at 338.001 kb on + strand, within ABID97_RS01720at 338.001 kb on + strand, within ABID97_RS01720at 338.002 kb on - strand, within ABID97_RS01720at 338.196 kb on + strand, within ABID97_RS01720at 338.196 kb on + strand, within ABID97_RS01720at 338.247 kb on + strand, within ABID97_RS01720at 338.248 kb on - strand, within ABID97_RS01720at 338.482 kb on - strandat 338.497 kb on - strandat 338.903 kb on + strand, within ABID97_RS01725at 339.164 kb on - strand, within ABID97_RS01730at 339.929 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
337,716 + ABID97_RS01720 0.40 +0.5
337,983 + ABID97_RS01720 0.61 +0.5
337,983 + ABID97_RS01720 0.61 -0.2
337,983 + ABID97_RS01720 0.61 -0.9
338,001 + ABID97_RS01720 0.62 +0.7
338,001 + ABID97_RS01720 0.62 -1.2
338,001 + ABID97_RS01720 0.62 -0.4
338,002 - ABID97_RS01720 0.62 +0.3
338,196 + ABID97_RS01720 0.78 +0.4
338,196 + ABID97_RS01720 0.78 +0.1
338,247 + ABID97_RS01720 0.81 +0.3
338,248 - ABID97_RS01720 0.82 -0.6
338,482 - +0.4
338,497 - +0.4
338,903 + ABID97_RS01725 0.81 -2.7
339,164 - ABID97_RS01730 0.17 +0.5
339,929 + +0.5

Or see this region's nucleotide sequence