Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00970

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS00965 and ABID97_RS00970 overlap by 4 nucleotidesABID97_RS00970 and ABID97_RS00975 are separated by 121 nucleotides ABID97_RS00965: ABID97_RS00965 - ATP-binding protein, at 194,660 to 196,048 _RS00965 ABID97_RS00970: ABID97_RS00970 - response regulator transcription factor, at 196,045 to 196,701 _RS00970 ABID97_RS00975: ABID97_RS00975 - winged helix DNA-binding domain-containing protein, at 196,823 to 197,926 _RS00975 Position (kb) 196 197Strain fitness (log2 ratio) -1 0 1at 195.598 kb on - strand, within ABID97_RS00965at 195.924 kb on + strandat 196.166 kb on + strand, within ABID97_RS00970at 196.167 kb on - strand, within ABID97_RS00970at 196.167 kb on - strand, within ABID97_RS00970at 196.568 kb on + strand, within ABID97_RS00970at 196.569 kb on - strand, within ABID97_RS00970at 196.569 kb on - strand, within ABID97_RS00970at 196.727 kb on + strandat 196.728 kb on - strandat 196.787 kb on - strandat 196.789 kb on + strandat 196.790 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
195,598 - ABID97_RS00965 0.68 -1.4
195,924 + -0.1
196,166 + ABID97_RS00970 0.18 +0.2
196,167 - ABID97_RS00970 0.19 -1.2
196,167 - ABID97_RS00970 0.19 -1.7
196,568 + ABID97_RS00970 0.80 -1.0
196,569 - ABID97_RS00970 0.80 -0.1
196,569 - ABID97_RS00970 0.80 +1.0
196,727 + +0.2
196,728 - -0.4
196,787 - -0.6
196,789 + -0.1
196,790 - -1.4

Or see this region's nucleotide sequence