Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4284

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4282 and EX28DRAFT_4283 are separated by 1 nucleotidesEX28DRAFT_4283 and EX28DRAFT_4284 overlap by 4 nucleotidesEX28DRAFT_4284 and EX28DRAFT_4285 are separated by 97 nucleotides EX28DRAFT_4282: EX28DRAFT_4282 - ABC-type sugar transport systems, ATPase components, at 85,885 to 86,955 _4282 EX28DRAFT_4283: EX28DRAFT_4283 - ABC-type sugar transport system, permease component, at 86,957 to 87,802 _4283 EX28DRAFT_4284: EX28DRAFT_4284 - ABC-type sugar transport systems, permease components, at 87,799 to 88,716 _4284 EX28DRAFT_4285: EX28DRAFT_4285 - ABC-type sugar transport system, periplasmic component, at 88,814 to 90,130 _4285 Position (kb) 87 88 89Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 87.174 kb on + strand, within EX28DRAFT_4283at 87.175 kb on - strand, within EX28DRAFT_4283at 87.178 kb on + strand, within EX28DRAFT_4283at 87.178 kb on + strand, within EX28DRAFT_4283at 87.178 kb on + strand, within EX28DRAFT_4283at 87.360 kb on - strand, within EX28DRAFT_4283at 87.418 kb on + strand, within EX28DRAFT_4283at 87.541 kb on + strand, within EX28DRAFT_4283at 87.542 kb on - strand, within EX28DRAFT_4283at 87.720 kb on + strandat 87.721 kb on - strandat 87.763 kb on + strandat 87.763 kb on + strandat 87.764 kb on - strandat 87.816 kb on + strandat 87.828 kb on - strandat 87.934 kb on - strand, within EX28DRAFT_4284at 87.935 kb on + strand, within EX28DRAFT_4284at 87.936 kb on - strand, within EX28DRAFT_4284at 87.936 kb on - strand, within EX28DRAFT_4284at 87.940 kb on - strand, within EX28DRAFT_4284at 88.172 kb on + strand, within EX28DRAFT_4284at 88.172 kb on + strand, within EX28DRAFT_4284at 88.176 kb on + strand, within EX28DRAFT_4284at 88.176 kb on + strand, within EX28DRAFT_4284at 88.176 kb on + strand, within EX28DRAFT_4284at 88.177 kb on - strand, within EX28DRAFT_4284at 88.177 kb on - strand, within EX28DRAFT_4284at 88.343 kb on + strand, within EX28DRAFT_4284at 88.371 kb on + strand, within EX28DRAFT_4284at 88.391 kb on + strand, within EX28DRAFT_4284at 88.391 kb on + strand, within EX28DRAFT_4284at 88.391 kb on + strand, within EX28DRAFT_4284at 88.487 kb on + strand, within EX28DRAFT_4284at 88.487 kb on + strand, within EX28DRAFT_4284at 88.488 kb on - strand, within EX28DRAFT_4284at 88.488 kb on - strand, within EX28DRAFT_4284at 88.488 kb on - strand, within EX28DRAFT_4284at 88.600 kb on - strand, within EX28DRAFT_4284at 88.687 kb on - strandat 88.687 kb on - strandat 88.699 kb on + strandat 88.700 kb on - strandat 88.700 kb on - strandat 88.703 kb on + strandat 88.703 kb on + strandat 88.703 kb on + strandat 88.703 kb on + strandat 88.704 kb on - strandat 88.816 kb on - strandat 89.169 kb on + strand, within EX28DRAFT_4285at 89.169 kb on + strand, within EX28DRAFT_4285at 89.170 kb on - strand, within EX28DRAFT_4285at 89.257 kb on - strand, within EX28DRAFT_4285at 89.292 kb on + strand, within EX28DRAFT_4285at 89.332 kb on + strand, within EX28DRAFT_4285at 89.333 kb on - strand, within EX28DRAFT_4285at 89.353 kb on - strand, within EX28DRAFT_4285at 89.389 kb on - strand, within EX28DRAFT_4285at 89.389 kb on - strand, within EX28DRAFT_4285at 89.607 kb on + strand, within EX28DRAFT_4285at 89.608 kb on - strand, within EX28DRAFT_4285at 89.608 kb on - strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.685 kb on + strand, within EX28DRAFT_4285at 89.686 kb on - strand, within EX28DRAFT_4285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
87,174 + EX28DRAFT_4283 0.26 +0.2
87,175 - EX28DRAFT_4283 0.26 +0.3
87,178 + EX28DRAFT_4283 0.26 +4.2
87,178 + EX28DRAFT_4283 0.26 -1.7
87,178 + EX28DRAFT_4283 0.26 +1.0
87,360 - EX28DRAFT_4283 0.48 -1.1
87,418 + EX28DRAFT_4283 0.54 +0.3
87,541 + EX28DRAFT_4283 0.69 -0.1
87,542 - EX28DRAFT_4283 0.69 +0.7
87,720 + -0.2
87,721 - +1.4
87,763 + -0.2
87,763 + +0.9
87,764 - +0.3
87,816 + +2.3
87,828 - +0.6
87,934 - EX28DRAFT_4284 0.15 +0.0
87,935 + EX28DRAFT_4284 0.15 -4.0
87,936 - EX28DRAFT_4284 0.15 -0.4
87,936 - EX28DRAFT_4284 0.15 -1.0
87,940 - EX28DRAFT_4284 0.15 -1.9
88,172 + EX28DRAFT_4284 0.41 +0.4
88,172 + EX28DRAFT_4284 0.41 -3.5
88,176 + EX28DRAFT_4284 0.41 -0.9
88,176 + EX28DRAFT_4284 0.41 -0.3
88,176 + EX28DRAFT_4284 0.41 -0.9
88,177 - EX28DRAFT_4284 0.41 -0.6
88,177 - EX28DRAFT_4284 0.41 +1.7
88,343 + EX28DRAFT_4284 0.59 +1.0
88,371 + EX28DRAFT_4284 0.62 +0.7
88,391 + EX28DRAFT_4284 0.64 -0.5
88,391 + EX28DRAFT_4284 0.64 -0.8
88,391 + EX28DRAFT_4284 0.64 +1.3
88,487 + EX28DRAFT_4284 0.75 -0.9
88,487 + EX28DRAFT_4284 0.75 -1.6
88,488 - EX28DRAFT_4284 0.75 +1.3
88,488 - EX28DRAFT_4284 0.75 +1.2
88,488 - EX28DRAFT_4284 0.75 -0.7
88,600 - EX28DRAFT_4284 0.87 -0.7
88,687 - +0.1
88,687 - +1.9
88,699 + -2.2
88,700 - +0.0
88,700 - -0.7
88,703 + +0.7
88,703 + -0.9
88,703 + -1.4
88,703 + -0.1
88,704 - -3.1
88,816 - -0.5
89,169 + EX28DRAFT_4285 0.27 -0.3
89,169 + EX28DRAFT_4285 0.27 -1.8
89,170 - EX28DRAFT_4285 0.27 +0.4
89,257 - EX28DRAFT_4285 0.34 +0.1
89,292 + EX28DRAFT_4285 0.36 +2.3
89,332 + EX28DRAFT_4285 0.39 -0.3
89,333 - EX28DRAFT_4285 0.39 -1.1
89,353 - EX28DRAFT_4285 0.41 -2.5
89,389 - EX28DRAFT_4285 0.44 -1.6
89,389 - EX28DRAFT_4285 0.44 -1.6
89,607 + EX28DRAFT_4285 0.60 +0.3
89,608 - EX28DRAFT_4285 0.60 -1.1
89,608 - EX28DRAFT_4285 0.60 -0.4
89,682 + EX28DRAFT_4285 0.66 +0.3
89,682 + EX28DRAFT_4285 0.66 +0.7
89,682 + EX28DRAFT_4285 0.66 +0.0
89,682 + EX28DRAFT_4285 0.66 -1.4
89,685 + EX28DRAFT_4285 0.66 +1.0
89,686 - EX28DRAFT_4285 0.66 +1.3

Or see this region's nucleotide sequence