Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4272 and EX28DRAFT_4273 are separated by 3 nucleotides EX28DRAFT_4273 and EX28DRAFT_4274 are separated by 126 nucleotides EX28DRAFT_4274 and EX28DRAFT_4275 are separated by 44 nucleotides EX28DRAFT_4275 and EX28DRAFT_4276 are separated by 123 nucleotides
EX28DRAFT_4272: EX28DRAFT_4272 - gluconate transporter, at 77,127 to 78,467
_4272
EX28DRAFT_4273: EX28DRAFT_4273 - carbohydrate kinase, thermoresistant glucokinase family, at 78,471 to 78,998
_4273
EX28DRAFT_4274: EX28DRAFT_4274 - transcriptional regulator, LacI family, at 79,125 to 80,177
_4274
EX28DRAFT_4275: EX28DRAFT_4275 - Pirin-related protein, at 80,222 to 80,917
_4275
EX28DRAFT_4276: EX28DRAFT_4276 - Predicted dehydrogenases and related proteins, at 81,041 to 82,078
_4276
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.360 kb on - strand at 78.360 kb on - strand at 78.392 kb on + strand at 78.450 kb on + strand at 78.462 kb on - strand at 78.472 kb on + strand at 78.473 kb on - strand at 78.482 kb on + strand at 78.482 kb on + strand at 78.483 kb on - strand at 78.486 kb on - strand at 78.673 kb on + strand, within EX28DRAFT_4273 at 78.674 kb on - strand, within EX28DRAFT_4273 at 78.674 kb on - strand, within EX28DRAFT_4273 at 78.773 kb on + strand, within EX28DRAFT_4273 at 78.968 kb on - strand at 78.987 kb on - strand at 79.130 kb on + strand at 79.131 kb on - strand at 79.158 kb on + strand at 79.233 kb on - strand, within EX28DRAFT_4274 at 79.233 kb on - strand, within EX28DRAFT_4274 at 79.453 kb on + strand, within EX28DRAFT_4274 at 79.483 kb on + strand, within EX28DRAFT_4274 at 79.484 kb on - strand, within EX28DRAFT_4274 at 79.538 kb on + strand, within EX28DRAFT_4274 at 79.539 kb on - strand, within EX28DRAFT_4274 at 79.542 kb on - strand, within EX28DRAFT_4274 at 79.813 kb on + strand, within EX28DRAFT_4274 at 79.975 kb on + strand, within EX28DRAFT_4274 at 79.976 kb on - strand, within EX28DRAFT_4274 at 80.044 kb on - strand, within EX28DRAFT_4274 at 80.209 kb on + strand at 80.210 kb on - strand at 80.224 kb on - strand at 80.574 kb on + strand, within EX28DRAFT_4275 at 80.607 kb on + strand, within EX28DRAFT_4275 at 80.642 kb on - strand, within EX28DRAFT_4275 at 80.642 kb on - strand, within EX28DRAFT_4275 at 80.718 kb on + strand, within EX28DRAFT_4275 at 80.718 kb on + strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.829 kb on + strand, within EX28DRAFT_4275 at 80.829 kb on + strand, within EX28DRAFT_4275 at 80.830 kb on - strand, within EX28DRAFT_4275 at 80.906 kb on + strand at 80.910 kb on + strand at 80.910 kb on + strand at 80.910 kb on + strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.949 kb on - strand at 80.977 kb on + strand at 81.174 kb on + strand, within EX28DRAFT_4276 at 81.175 kb on - strand, within EX28DRAFT_4276
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 78,360 - +1.8 78,360 - -1.4 78,392 + +0.6 78,450 + +0.2 78,462 - +1.7 78,472 + -2.1 78,473 - -1.0 78,482 + -2.1 78,482 + +0.2 78,483 - -0.2 78,486 - -1.5 78,673 + EX28DRAFT_4273 0.38 -2.0 78,674 - EX28DRAFT_4273 0.38 -1.4 78,674 - EX28DRAFT_4273 0.38 -2.6 78,773 + EX28DRAFT_4273 0.57 +1.0 78,968 - +1.7 78,987 - +0.2 79,130 + -1.7 79,131 - +1.0 79,158 + -0.7 79,233 - EX28DRAFT_4274 0.10 -0.8 79,233 - EX28DRAFT_4274 0.10 -2.8 79,453 + EX28DRAFT_4274 0.31 -0.7 79,483 + EX28DRAFT_4274 0.34 -2.5 79,484 - EX28DRAFT_4274 0.34 -1.0 79,538 + EX28DRAFT_4274 0.39 -2.2 79,539 - EX28DRAFT_4274 0.39 -1.1 79,542 - EX28DRAFT_4274 0.40 -0.7 79,813 + EX28DRAFT_4274 0.65 -0.9 79,975 + EX28DRAFT_4274 0.81 -1.5 79,976 - EX28DRAFT_4274 0.81 -1.2 80,044 - EX28DRAFT_4274 0.87 -1.8 80,209 + +2.1 80,210 - +0.0 80,224 - -0.6 80,574 + EX28DRAFT_4275 0.51 -0.2 80,607 + EX28DRAFT_4275 0.55 +0.3 80,642 - EX28DRAFT_4275 0.60 -0.8 80,642 - EX28DRAFT_4275 0.60 -0.1 80,718 + EX28DRAFT_4275 0.71 -1.0 80,718 + EX28DRAFT_4275 0.71 -0.3 80,719 - EX28DRAFT_4275 0.71 +1.5 80,719 - EX28DRAFT_4275 0.71 +0.1 80,719 - EX28DRAFT_4275 0.71 -0.5 80,719 - EX28DRAFT_4275 0.71 +0.0 80,719 - EX28DRAFT_4275 0.71 -0.7 80,719 - EX28DRAFT_4275 0.71 +0.2 80,719 - EX28DRAFT_4275 0.71 -0.7 80,829 + EX28DRAFT_4275 0.87 +0.5 80,829 + EX28DRAFT_4275 0.87 -0.0 80,830 - EX28DRAFT_4275 0.87 -0.6 80,906 + +0.3 80,910 + +0.0 80,910 + +0.4 80,910 + +0.5 80,911 - +0.5 80,911 - -0.4 80,911 - -1.2 80,949 - -1.1 80,977 + -0.7 81,174 + EX28DRAFT_4276 0.13 -0.3 81,175 - EX28DRAFT_4276 0.13 +0.1
Or see this region's nucleotide sequence