Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4164

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4163 and EX28DRAFT_4164 are separated by 3 nucleotidesEX28DRAFT_4164 and EX28DRAFT_4165 are separated by 278 nucleotidesEX28DRAFT_4165 and EX28DRAFT_4166 are separated by 106 nucleotides EX28DRAFT_4163: EX28DRAFT_4163 - Cytosine deaminase and related metal-dependent hydrolases, at 144,830 to 146,146 _4163 EX28DRAFT_4164: EX28DRAFT_4164 - Major Facilitator Superfamily, at 146,150 to 147,334 _4164 EX28DRAFT_4165: EX28DRAFT_4165 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 147,613 to 148,185 _4165 EX28DRAFT_4166: EX28DRAFT_4166 - Protein of unknown function (DUF2559), at 148,292 to 148,459 _4166 Position (kb) 146 147 148Strain fitness (log2 ratio) -2 -1 0 1 2at 145.451 kb on + strand, within EX28DRAFT_4163at 145.452 kb on - strand, within EX28DRAFT_4163at 145.589 kb on + strand, within EX28DRAFT_4163at 145.590 kb on - strand, within EX28DRAFT_4163at 145.601 kb on + strand, within EX28DRAFT_4163at 145.602 kb on - strand, within EX28DRAFT_4163at 145.643 kb on - strand, within EX28DRAFT_4163at 145.860 kb on - strand, within EX28DRAFT_4163at 145.936 kb on + strand, within EX28DRAFT_4163at 146.100 kb on + strandat 146.100 kb on + strandat 146.101 kb on - strandat 146.101 kb on - strandat 146.232 kb on + strandat 146.233 kb on - strandat 146.402 kb on - strand, within EX28DRAFT_4164at 146.403 kb on + strand, within EX28DRAFT_4164at 146.404 kb on - strand, within EX28DRAFT_4164at 146.404 kb on - strand, within EX28DRAFT_4164at 146.449 kb on + strand, within EX28DRAFT_4164at 146.449 kb on + strand, within EX28DRAFT_4164at 146.450 kb on - strand, within EX28DRAFT_4164at 146.450 kb on - strand, within EX28DRAFT_4164at 146.450 kb on - strand, within EX28DRAFT_4164at 146.450 kb on - strand, within EX28DRAFT_4164at 146.487 kb on - strand, within EX28DRAFT_4164at 146.497 kb on + strand, within EX28DRAFT_4164at 146.551 kb on + strand, within EX28DRAFT_4164at 146.574 kb on + strand, within EX28DRAFT_4164at 146.574 kb on + strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.641 kb on - strand, within EX28DRAFT_4164at 146.682 kb on + strand, within EX28DRAFT_4164at 146.682 kb on + strand, within EX28DRAFT_4164at 146.683 kb on - strand, within EX28DRAFT_4164at 146.817 kb on + strand, within EX28DRAFT_4164at 146.818 kb on - strand, within EX28DRAFT_4164at 146.818 kb on - strand, within EX28DRAFT_4164at 146.838 kb on + strand, within EX28DRAFT_4164at 146.838 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.962 kb on - strand, within EX28DRAFT_4164at 147.157 kb on + strand, within EX28DRAFT_4164at 147.158 kb on - strand, within EX28DRAFT_4164at 147.328 kb on + strandat 147.329 kb on - strandat 147.586 kb on + strandat 147.586 kb on + strandat 147.587 kb on - strandat 147.589 kb on - strandat 147.805 kb on + strand, within EX28DRAFT_4165at 147.805 kb on + strand, within EX28DRAFT_4165at 147.844 kb on - strand, within EX28DRAFT_4165at 147.904 kb on - strand, within EX28DRAFT_4165at 147.904 kb on - strand, within EX28DRAFT_4165at 147.975 kb on + strand, within EX28DRAFT_4165at 148.222 kb on + strandat 148.223 kb on - strandat 148.223 kb on - strandat 148.254 kb on + strandat 148.254 kb on + strandat 148.254 kb on + strandat 148.254 kb on + strandat 148.255 kb on - strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.257 kb on - strandat 148.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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145,451 + EX28DRAFT_4163 0.47 +0.8
145,452 - EX28DRAFT_4163 0.47 -0.2
145,589 + EX28DRAFT_4163 0.58 -0.3
145,590 - EX28DRAFT_4163 0.58 +2.7
145,601 + EX28DRAFT_4163 0.59 +0.8
145,602 - EX28DRAFT_4163 0.59 +2.6
145,643 - EX28DRAFT_4163 0.62 +0.0
145,860 - EX28DRAFT_4163 0.78 -0.6
145,936 + EX28DRAFT_4163 0.84 +1.7
146,100 + +0.7
146,100 + -0.4
146,101 - +0.5
146,101 - -1.4
146,232 + -1.5
146,233 - -0.6
146,402 - EX28DRAFT_4164 0.21 -1.4
146,403 + EX28DRAFT_4164 0.21 +0.2
146,404 - EX28DRAFT_4164 0.21 +0.2
146,404 - EX28DRAFT_4164 0.21 +0.2
146,449 + EX28DRAFT_4164 0.25 +1.4
146,449 + EX28DRAFT_4164 0.25 +0.4
146,450 - EX28DRAFT_4164 0.25 +2.1
146,450 - EX28DRAFT_4164 0.25 +0.3
146,450 - EX28DRAFT_4164 0.25 +0.8
146,450 - EX28DRAFT_4164 0.25 +0.1
146,487 - EX28DRAFT_4164 0.28 -0.1
146,497 + EX28DRAFT_4164 0.29 +1.0
146,551 + EX28DRAFT_4164 0.34 +2.7
146,574 + EX28DRAFT_4164 0.36 -0.1
146,574 + EX28DRAFT_4164 0.36 -0.3
146,575 - EX28DRAFT_4164 0.36 +0.8
146,575 - EX28DRAFT_4164 0.36 +0.3
146,575 - EX28DRAFT_4164 0.36 -0.7
146,575 - EX28DRAFT_4164 0.36 -2.0
146,575 - EX28DRAFT_4164 0.36 +1.3
146,641 - EX28DRAFT_4164 0.41 +1.4
146,682 + EX28DRAFT_4164 0.45 -0.3
146,682 + EX28DRAFT_4164 0.45 +0.1
146,683 - EX28DRAFT_4164 0.45 +0.5
146,817 + EX28DRAFT_4164 0.56 -0.1
146,818 - EX28DRAFT_4164 0.56 +1.9
146,818 - EX28DRAFT_4164 0.56 +2.5
146,838 + EX28DRAFT_4164 0.58 -0.3
146,838 + EX28DRAFT_4164 0.58 +0.5
146,961 + EX28DRAFT_4164 0.68 +2.2
146,961 + EX28DRAFT_4164 0.68 -0.6
146,961 + EX28DRAFT_4164 0.68 -1.5
146,961 + EX28DRAFT_4164 0.68 +0.6
146,961 + EX28DRAFT_4164 0.68 +1.2
146,961 + EX28DRAFT_4164 0.68 -0.2
146,962 - EX28DRAFT_4164 0.69 +1.2
147,157 + EX28DRAFT_4164 0.85 -1.0
147,158 - EX28DRAFT_4164 0.85 +0.4
147,328 + +0.8
147,329 - +0.4
147,586 + -1.0
147,586 + -1.1
147,587 - -1.4
147,589 - -1.3
147,805 + EX28DRAFT_4165 0.34 -1.3
147,805 + EX28DRAFT_4165 0.34 -1.1
147,844 - EX28DRAFT_4165 0.40 +0.1
147,904 - EX28DRAFT_4165 0.51 -0.2
147,904 - EX28DRAFT_4165 0.51 +0.3
147,975 + EX28DRAFT_4165 0.63 -0.9
148,222 + +1.9
148,223 - +1.1
148,223 - +0.1
148,254 + +1.0
148,254 + -1.5
148,254 + +1.5
148,254 + +0.4
148,255 - +0.2
148,256 + -1.3
148,256 + +0.4
148,256 + +1.1
148,256 + +1.5
148,256 + -0.3
148,256 + -0.5
148,256 + +0.2
148,256 + +0.6
148,257 - -0.4
148,257 - +0.7

Or see this region's nucleotide sequence