Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3905 and EX28DRAFT_3906 are separated by 12 nucleotides EX28DRAFT_3906 and EX28DRAFT_3907 are separated by 288 nucleotides
EX28DRAFT_3905: EX28DRAFT_3905 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 115,704 to 118,022
_3905
EX28DRAFT_3906: EX28DRAFT_3906 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 118,035 to 119,426
_3906
EX28DRAFT_3907: EX28DRAFT_3907 - tRNA, at 119,715 to 119,805
_3907
Position (kb) 118
119
120 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 117.181 kb on + strand, within EX28DRAFT_3905 at 117.307 kb on + strand, within EX28DRAFT_3905 at 117.317 kb on - strand, within EX28DRAFT_3905 at 117.443 kb on - strand, within EX28DRAFT_3905 at 117.577 kb on + strand, within EX28DRAFT_3905 at 117.577 kb on + strand, within EX28DRAFT_3905 at 117.578 kb on - strand, within EX28DRAFT_3905 at 117.578 kb on - strand, within EX28DRAFT_3905 at 117.578 kb on - strand, within EX28DRAFT_3905 at 117.747 kb on + strand, within EX28DRAFT_3905 at 117.748 kb on - strand, within EX28DRAFT_3905 at 117.971 kb on - strand at 117.996 kb on - strand at 118.036 kb on + strand at 118.037 kb on - strand at 118.147 kb on + strand at 118.147 kb on + strand at 118.147 kb on + strand at 118.180 kb on + strand, within EX28DRAFT_3906 at 118.181 kb on - strand, within EX28DRAFT_3906 at 118.261 kb on + strand, within EX28DRAFT_3906 at 118.346 kb on + strand, within EX28DRAFT_3906 at 118.346 kb on + strand, within EX28DRAFT_3906 at 118.669 kb on + strand, within EX28DRAFT_3906 at 118.670 kb on - strand, within EX28DRAFT_3906 at 118.670 kb on - strand, within EX28DRAFT_3906 at 118.670 kb on - strand, within EX28DRAFT_3906 at 118.670 kb on - strand, within EX28DRAFT_3906 at 118.670 kb on - strand, within EX28DRAFT_3906 at 118.673 kb on - strand, within EX28DRAFT_3906 at 118.673 kb on - strand, within EX28DRAFT_3906 at 118.997 kb on + strand, within EX28DRAFT_3906 at 119.063 kb on - strand, within EX28DRAFT_3906 at 119.083 kb on + strand, within EX28DRAFT_3906 at 119.084 kb on - strand, within EX28DRAFT_3906 at 119.088 kb on - strand, within EX28DRAFT_3906 at 119.137 kb on + strand, within EX28DRAFT_3906 at 119.415 kb on + strand at 119.416 kb on - strand at 119.479 kb on - strand at 119.617 kb on - strand at 119.674 kb on + strand at 119.679 kb on - strand at 119.679 kb on - strand at 119.680 kb on + strand at 119.828 kb on + strand at 119.871 kb on + strand at 119.889 kb on + strand at 120.057 kb on - strand at 120.090 kb on + strand at 120.230 kb on + strand at 120.233 kb on - strand at 120.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 117,181 + EX28DRAFT_3905 0.64 +1.2 117,307 + EX28DRAFT_3905 0.69 +0.2 117,317 - EX28DRAFT_3905 0.70 +0.8 117,443 - EX28DRAFT_3905 0.75 -1.4 117,577 + EX28DRAFT_3905 0.81 +1.1 117,577 + EX28DRAFT_3905 0.81 +4.2 117,578 - EX28DRAFT_3905 0.81 +0.6 117,578 - EX28DRAFT_3905 0.81 -0.8 117,578 - EX28DRAFT_3905 0.81 -2.3 117,747 + EX28DRAFT_3905 0.88 -0.4 117,748 - EX28DRAFT_3905 0.88 +0.5 117,971 - +1.3 117,996 - +1.3 118,036 + +1.3 118,037 - +0.1 118,147 + +2.2 118,147 + -0.9 118,147 + -0.4 118,180 + EX28DRAFT_3906 0.10 +1.1 118,181 - EX28DRAFT_3906 0.10 +0.2 118,261 + EX28DRAFT_3906 0.16 +0.2 118,346 + EX28DRAFT_3906 0.22 +1.2 118,346 + EX28DRAFT_3906 0.22 -0.6 118,669 + EX28DRAFT_3906 0.46 +0.6 118,670 - EX28DRAFT_3906 0.46 -0.4 118,670 - EX28DRAFT_3906 0.46 -0.7 118,670 - EX28DRAFT_3906 0.46 +0.4 118,670 - EX28DRAFT_3906 0.46 +1.6 118,670 - EX28DRAFT_3906 0.46 +0.4 118,673 - EX28DRAFT_3906 0.46 +0.5 118,673 - EX28DRAFT_3906 0.46 +0.5 118,997 + EX28DRAFT_3906 0.69 -2.0 119,063 - EX28DRAFT_3906 0.74 -0.6 119,083 + EX28DRAFT_3906 0.75 +0.5 119,084 - EX28DRAFT_3906 0.75 -1.4 119,088 - EX28DRAFT_3906 0.76 +2.6 119,137 + EX28DRAFT_3906 0.79 -1.6 119,415 + -0.1 119,416 - -0.3 119,479 - +0.3 119,617 - -1.9 119,674 + +1.0 119,679 - +0.2 119,679 - +1.2 119,680 + +0.2 119,828 + -0.0 119,871 + +2.3 119,889 + +1.1 120,057 - -1.6 120,090 + -1.5 120,230 + -1.6 120,233 - +0.1 120,332 - +0.6
Or see this region's nucleotide sequence