Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3829

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3827 and EX28DRAFT_3828 overlap by 1 nucleotidesEX28DRAFT_3828 and EX28DRAFT_3829 are separated by 103 nucleotidesEX28DRAFT_3829 and EX28DRAFT_3830 are separated by 72 nucleotides EX28DRAFT_3827: EX28DRAFT_3827 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 31,259 to 32,179 _3827 EX28DRAFT_3828: EX28DRAFT_3828 - Amidases related to nicotinamidase, at 32,179 to 32,718 _3828 EX28DRAFT_3829: EX28DRAFT_3829 - D-xylulose kinase, at 32,822 to 34,276 _3829 EX28DRAFT_3830: EX28DRAFT_3830 - xylose isomerase, at 34,349 to 35,734 _3830 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 32.039 kb on + strand, within EX28DRAFT_3827at 32.040 kb on - strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.074 kb on - strand, within EX28DRAFT_3827at 32.133 kb on - strandat 32.133 kb on - strandat 32.277 kb on + strand, within EX28DRAFT_3828at 32.288 kb on + strand, within EX28DRAFT_3828at 32.289 kb on - strand, within EX28DRAFT_3828at 32.401 kb on - strand, within EX28DRAFT_3828at 32.464 kb on - strand, within EX28DRAFT_3828at 32.525 kb on + strand, within EX28DRAFT_3828at 32.525 kb on + strand, within EX28DRAFT_3828at 32.751 kb on + strandat 32.819 kb on + strandat 32.909 kb on + strandat 32.909 kb on + strandat 32.976 kb on - strand, within EX28DRAFT_3829at 33.265 kb on + strand, within EX28DRAFT_3829at 33.266 kb on - strand, within EX28DRAFT_3829at 33.282 kb on + strand, within EX28DRAFT_3829at 33.282 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.683 kb on - strand, within EX28DRAFT_3829at 33.683 kb on - strand, within EX28DRAFT_3829at 33.895 kb on + strand, within EX28DRAFT_3829at 33.896 kb on - strand, within EX28DRAFT_3829at 34.272 kb on + strandat 34.272 kb on + strandat 34.272 kb on + strandat 34.272 kb on + strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.277 kb on + strandat 34.278 kb on - strandat 34.355 kb on - strandat 34.366 kb on - strandat 34.366 kb on - strandat 34.366 kb on - strandat 34.366 kb on - strandat 34.373 kb on + strandat 34.440 kb on + strandat 34.441 kb on - strandat 34.624 kb on - strand, within EX28DRAFT_3830at 34.646 kb on + strand, within EX28DRAFT_3830at 34.646 kb on + strand, within EX28DRAFT_3830at 34.647 kb on - strand, within EX28DRAFT_3830at 34.705 kb on - strand, within EX28DRAFT_3830at 34.920 kb on + strand, within EX28DRAFT_3830at 34.921 kb on - strand, within EX28DRAFT_3830at 34.939 kb on - strand, within EX28DRAFT_3830at 34.945 kb on - strand, within EX28DRAFT_3830at 35.015 kb on - strand, within EX28DRAFT_3830at 35.015 kb on - strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.119 kb on - strand, within EX28DRAFT_3830at 35.119 kb on - strand, within EX28DRAFT_3830at 35.119 kb on - strand, within EX28DRAFT_3830at 35.182 kb on + strand, within EX28DRAFT_3830at 35.183 kb on - strand, within EX28DRAFT_3830at 35.183 kb on - strand, within EX28DRAFT_3830

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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32,039 + EX28DRAFT_3827 0.85 +0.5
32,040 - EX28DRAFT_3827 0.85 -0.4
32,073 + EX28DRAFT_3827 0.88 -0.3
32,073 + EX28DRAFT_3827 0.88 -0.2
32,073 + EX28DRAFT_3827 0.88 +1.4
32,073 + EX28DRAFT_3827 0.88 +2.4
32,073 + EX28DRAFT_3827 0.88 -0.2
32,074 - EX28DRAFT_3827 0.88 -0.5
32,133 - -0.8
32,133 - +0.7
32,277 + EX28DRAFT_3828 0.18 -2.9
32,288 + EX28DRAFT_3828 0.20 -0.7
32,289 - EX28DRAFT_3828 0.20 +3.7
32,401 - EX28DRAFT_3828 0.41 -0.1
32,464 - EX28DRAFT_3828 0.53 -0.7
32,525 + EX28DRAFT_3828 0.64 +0.9
32,525 + EX28DRAFT_3828 0.64 +0.5
32,751 + -2.1
32,819 + -0.6
32,909 + +0.3
32,909 + +2.4
32,976 - EX28DRAFT_3829 0.11 -0.2
33,265 + EX28DRAFT_3829 0.30 -0.5
33,266 - EX28DRAFT_3829 0.31 -2.4
33,282 + EX28DRAFT_3829 0.32 -2.1
33,282 + EX28DRAFT_3829 0.32 +0.6
33,682 + EX28DRAFT_3829 0.59 -0.2
33,682 + EX28DRAFT_3829 0.59 -1.1
33,682 + EX28DRAFT_3829 0.59 -0.6
33,682 + EX28DRAFT_3829 0.59 -0.2
33,683 - EX28DRAFT_3829 0.59 +2.7
33,683 - EX28DRAFT_3829 0.59 -2.4
33,895 + EX28DRAFT_3829 0.74 -0.2
33,896 - EX28DRAFT_3829 0.74 +0.3
34,272 + +0.1
34,272 + -0.4
34,272 + +0.1
34,272 + -0.1
34,273 - +0.7
34,273 - +0.4
34,273 - +2.0
34,273 - -1.1
34,273 - -0.6
34,273 - -0.8
34,277 + +3.0
34,278 - -1.7
34,355 - +0.0
34,366 - -0.1
34,366 - -1.5
34,366 - -1.3
34,366 - -0.8
34,373 + -0.3
34,440 + -0.9
34,441 - -0.7
34,624 - EX28DRAFT_3830 0.20 -1.4
34,646 + EX28DRAFT_3830 0.21 -1.7
34,646 + EX28DRAFT_3830 0.21 -1.0
34,647 - EX28DRAFT_3830 0.22 -0.5
34,705 - EX28DRAFT_3830 0.26 -1.2
34,920 + EX28DRAFT_3830 0.41 -0.8
34,921 - EX28DRAFT_3830 0.41 -1.3
34,939 - EX28DRAFT_3830 0.43 -0.4
34,945 - EX28DRAFT_3830 0.43 -2.1
35,015 - EX28DRAFT_3830 0.48 -0.5
35,015 - EX28DRAFT_3830 0.48 -0.5
35,118 + EX28DRAFT_3830 0.55 -4.8
35,118 + EX28DRAFT_3830 0.55 -2.0
35,118 + EX28DRAFT_3830 0.55 -0.2
35,118 + EX28DRAFT_3830 0.55 -2.6
35,118 + EX28DRAFT_3830 0.55 -3.1
35,119 - EX28DRAFT_3830 0.56 -0.7
35,119 - EX28DRAFT_3830 0.56 -1.2
35,119 - EX28DRAFT_3830 0.56 -1.5
35,182 + EX28DRAFT_3830 0.60 -0.1
35,183 - EX28DRAFT_3830 0.60 -1.0
35,183 - EX28DRAFT_3830 0.60 -0.8

Or see this region's nucleotide sequence