Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3800

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3799 and EX28DRAFT_3800 are separated by 43 nucleotidesEX28DRAFT_3800 and EX28DRAFT_3801 overlap by 4 nucleotidesEX28DRAFT_3801 and EX28DRAFT_3802 are separated by 10 nucleotides EX28DRAFT_3799: EX28DRAFT_3799 - pantothenate kinase (EC 2.7.1.33), at 1,706 to 2,632 _3799 EX28DRAFT_3800: EX28DRAFT_3800 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 2,676 to 3,689 _3800 EX28DRAFT_3801: EX28DRAFT_3801 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 3,686 to 4,669 _3801 EX28DRAFT_3802: EX28DRAFT_3802 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 4,680 to 5,582 _3802 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1.681 kb on + strandat 2.631 kb on - strandat 2.744 kb on - strandat 2.858 kb on + strand, within EX28DRAFT_3800at 2.861 kb on + strand, within EX28DRAFT_3800at 2.861 kb on + strand, within EX28DRAFT_3800at 2.862 kb on - strand, within EX28DRAFT_3800at 2.983 kb on + strand, within EX28DRAFT_3800at 2.983 kb on + strand, within EX28DRAFT_3800at 2.983 kb on + strand, within EX28DRAFT_3800at 2.984 kb on - strand, within EX28DRAFT_3800at 2.984 kb on - strand, within EX28DRAFT_3800at 2.984 kb on - strand, within EX28DRAFT_3800at 3.008 kb on + strand, within EX28DRAFT_3800at 3.009 kb on - strand, within EX28DRAFT_3800at 3.046 kb on + strand, within EX28DRAFT_3800at 3.046 kb on + strand, within EX28DRAFT_3800at 3.047 kb on - strand, within EX28DRAFT_3800at 3.226 kb on + strand, within EX28DRAFT_3800at 3.226 kb on + strand, within EX28DRAFT_3800at 3.365 kb on - strand, within EX28DRAFT_3800at 3.449 kb on - strand, within EX28DRAFT_3800at 3.449 kb on - strand, within EX28DRAFT_3800at 3.628 kb on + strandat 3.683 kb on + strandat 3.689 kb on + strandat 3.690 kb on - strandat 3.837 kb on + strand, within EX28DRAFT_3801at 3.837 kb on + strand, within EX28DRAFT_3801at 3.838 kb on - strand, within EX28DRAFT_3801at 3.838 kb on - strand, within EX28DRAFT_3801at 3.838 kb on - strand, within EX28DRAFT_3801at 4.058 kb on - strand, within EX28DRAFT_3801at 4.301 kb on - strand, within EX28DRAFT_3801at 4.353 kb on + strand, within EX28DRAFT_3801at 4.459 kb on + strand, within EX28DRAFT_3801at 4.580 kb on + strandat 4.580 kb on + strandat 4.581 kb on - strandat 4.659 kb on - strandat 4.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,681 + +0.6
2,631 - -0.2
2,744 - -3.5
2,858 + EX28DRAFT_3800 0.18 -1.3
2,861 + EX28DRAFT_3800 0.18 -0.2
2,861 + EX28DRAFT_3800 0.18 -1.3
2,862 - EX28DRAFT_3800 0.18 -0.9
2,983 + EX28DRAFT_3800 0.30 -0.5
2,983 + EX28DRAFT_3800 0.30 +0.3
2,983 + EX28DRAFT_3800 0.30 +0.9
2,984 - EX28DRAFT_3800 0.30 -0.0
2,984 - EX28DRAFT_3800 0.30 +0.4
2,984 - EX28DRAFT_3800 0.30 -0.3
3,008 + EX28DRAFT_3800 0.33 -0.2
3,009 - EX28DRAFT_3800 0.33 -1.9
3,046 + EX28DRAFT_3800 0.36 -1.4
3,046 + EX28DRAFT_3800 0.36 -0.5
3,047 - EX28DRAFT_3800 0.37 +0.6
3,226 + EX28DRAFT_3800 0.54 +0.6
3,226 + EX28DRAFT_3800 0.54 -0.2
3,365 - EX28DRAFT_3800 0.68 +0.5
3,449 - EX28DRAFT_3800 0.76 -0.4
3,449 - EX28DRAFT_3800 0.76 -2.7
3,628 + +0.2
3,683 + +0.2
3,689 + +0.6
3,690 - +0.3
3,837 + EX28DRAFT_3801 0.15 -0.3
3,837 + EX28DRAFT_3801 0.15 +0.3
3,838 - EX28DRAFT_3801 0.15 -0.0
3,838 - EX28DRAFT_3801 0.15 +0.1
3,838 - EX28DRAFT_3801 0.15 -0.1
4,058 - EX28DRAFT_3801 0.38 -1.2
4,301 - EX28DRAFT_3801 0.62 +1.6
4,353 + EX28DRAFT_3801 0.68 -1.1
4,459 + EX28DRAFT_3801 0.79 -0.2
4,580 + -0.3
4,580 + +0.3
4,581 - +0.7
4,659 - +0.1
4,681 + +4.5

Or see this region's nucleotide sequence