Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3725 and EX28DRAFT_3726 are separated by 104 nucleotides EX28DRAFT_3726 and EX28DRAFT_3727 are separated by 62 nucleotides EX28DRAFT_3727 and EX28DRAFT_3728 are separated by 3 nucleotides EX28DRAFT_3728 and EX28DRAFT_3729 are separated by 33 nucleotides
EX28DRAFT_3725: EX28DRAFT_3725 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 401,284 to 402,054
_3725
EX28DRAFT_3726: EX28DRAFT_3726 - Phosphotransferase system, mannose/fructose-specific component IIA, at 402,159 to 402,599
_3726
EX28DRAFT_3727: EX28DRAFT_3727 - Predicted xylanase/chitin deacetylase, at 402,662 to 403,909
_3727
EX28DRAFT_3728: EX28DRAFT_3728 - L-aspartate 1-decarboxylase (EC 4.1.1.11), at 403,913 to 404,293
_3728
EX28DRAFT_3729: EX28DRAFT_3729 - pantoate--beta-alanine ligase, at 404,327 to 405,178
_3729
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 401.849 kb on - strand, within EX28DRAFT_3725 at 401.908 kb on + strand, within EX28DRAFT_3725 at 401.908 kb on + strand, within EX28DRAFT_3725 at 401.909 kb on - strand, within EX28DRAFT_3725 at 401.992 kb on - strand at 402.005 kb on - strand at 402.102 kb on + strand at 402.147 kb on - strand at 402.158 kb on + strand at 402.158 kb on + strand at 402.159 kb on - strand at 402.159 kb on - strand at 402.159 kb on - strand at 402.159 kb on - strand at 402.212 kb on + strand, within EX28DRAFT_3726 at 402.402 kb on - strand, within EX28DRAFT_3726 at 402.402 kb on - strand, within EX28DRAFT_3726 at 402.435 kb on - strand, within EX28DRAFT_3726 at 402.435 kb on - strand, within EX28DRAFT_3726 at 402.435 kb on - strand, within EX28DRAFT_3726 at 402.460 kb on - strand, within EX28DRAFT_3726 at 402.589 kb on - strand at 402.597 kb on + strand at 402.626 kb on - strand at 402.764 kb on - strand at 402.866 kb on + strand, within EX28DRAFT_3727 at 402.866 kb on + strand, within EX28DRAFT_3727 at 402.997 kb on + strand, within EX28DRAFT_3727 at 402.998 kb on - strand, within EX28DRAFT_3727 at 403.020 kb on - strand, within EX28DRAFT_3727 at 403.203 kb on - strand, within EX28DRAFT_3727 at 403.210 kb on + strand, within EX28DRAFT_3727 at 403.210 kb on + strand, within EX28DRAFT_3727 at 403.211 kb on - strand, within EX28DRAFT_3727 at 403.246 kb on + strand, within EX28DRAFT_3727 at 403.246 kb on + strand, within EX28DRAFT_3727 at 403.246 kb on + strand, within EX28DRAFT_3727 at 403.246 kb on + strand, within EX28DRAFT_3727 at 403.246 kb on + strand, within EX28DRAFT_3727 at 403.246 kb on + strand, within EX28DRAFT_3727 at 403.246 kb on + strand, within EX28DRAFT_3727 at 403.267 kb on - strand, within EX28DRAFT_3727 at 403.267 kb on - strand, within EX28DRAFT_3727 at 403.328 kb on + strand, within EX28DRAFT_3727 at 403.344 kb on - strand, within EX28DRAFT_3727 at 403.388 kb on - strand, within EX28DRAFT_3727 at 403.421 kb on + strand, within EX28DRAFT_3727 at 403.445 kb on + strand, within EX28DRAFT_3727 at 403.469 kb on - strand, within EX28DRAFT_3727 at 403.471 kb on + strand, within EX28DRAFT_3727 at 403.472 kb on - strand, within EX28DRAFT_3727 at 403.472 kb on - strand, within EX28DRAFT_3727 at 403.602 kb on + strand, within EX28DRAFT_3727 at 403.602 kb on + strand, within EX28DRAFT_3727 at 403.610 kb on + strand, within EX28DRAFT_3727 at 403.612 kb on + strand, within EX28DRAFT_3727 at 403.613 kb on - strand, within EX28DRAFT_3727 at 403.626 kb on + strand, within EX28DRAFT_3727 at 403.693 kb on + strand, within EX28DRAFT_3727 at 403.710 kb on - strand, within EX28DRAFT_3727 at 403.741 kb on + strand, within EX28DRAFT_3727 at 403.844 kb on + strand at 403.851 kb on + strand at 403.851 kb on + strand at 404.096 kb on - strand, within EX28DRAFT_3728 at 404.122 kb on - strand, within EX28DRAFT_3728 at 404.159 kb on - strand, within EX28DRAFT_3728 at 404.230 kb on - strand, within EX28DRAFT_3728 at 404.269 kb on + strand at 404.269 kb on + strand at 404.270 kb on - strand at 404.270 kb on - strand at 404.301 kb on - strand at 404.329 kb on - strand at 404.357 kb on + strand at 404.503 kb on + strand, within EX28DRAFT_3729 at 404.504 kb on - strand, within EX28DRAFT_3729 at 404.646 kb on - strand, within EX28DRAFT_3729 at 404.856 kb on + strand, within EX28DRAFT_3729 at 404.856 kb on + strand, within EX28DRAFT_3729 at 404.857 kb on - strand, within EX28DRAFT_3729
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 401,849 - EX28DRAFT_3725 0.73 +1.0 401,908 + EX28DRAFT_3725 0.81 +2.5 401,908 + EX28DRAFT_3725 0.81 +2.2 401,909 - EX28DRAFT_3725 0.81 +0.9 401,992 - +1.2 402,005 - -1.0 402,102 + -1.8 402,147 - +2.1 402,158 + +1.2 402,158 + +0.4 402,159 - -1.6 402,159 - -0.5 402,159 - -1.6 402,159 - -1.2 402,212 + EX28DRAFT_3726 0.12 -0.1 402,402 - EX28DRAFT_3726 0.55 +0.8 402,402 - EX28DRAFT_3726 0.55 -0.3 402,435 - EX28DRAFT_3726 0.63 +0.5 402,435 - EX28DRAFT_3726 0.63 +1.5 402,435 - EX28DRAFT_3726 0.63 -0.4 402,460 - EX28DRAFT_3726 0.68 +2.5 402,589 - -1.0 402,597 + +0.1 402,626 - -0.0 402,764 - +0.4 402,866 + EX28DRAFT_3727 0.16 +2.5 402,866 + EX28DRAFT_3727 0.16 -1.8 402,997 + EX28DRAFT_3727 0.27 -0.6 402,998 - EX28DRAFT_3727 0.27 +0.7 403,020 - EX28DRAFT_3727 0.29 +0.5 403,203 - EX28DRAFT_3727 0.43 -0.1 403,210 + EX28DRAFT_3727 0.44 -0.9 403,210 + EX28DRAFT_3727 0.44 -0.9 403,211 - EX28DRAFT_3727 0.44 -0.5 403,246 + EX28DRAFT_3727 0.47 +1.2 403,246 + EX28DRAFT_3727 0.47 -1.0 403,246 + EX28DRAFT_3727 0.47 -0.3 403,246 + EX28DRAFT_3727 0.47 +3.1 403,246 + EX28DRAFT_3727 0.47 -0.2 403,246 + EX28DRAFT_3727 0.47 -2.3 403,246 + EX28DRAFT_3727 0.47 +0.0 403,267 - EX28DRAFT_3727 0.48 +0.5 403,267 - EX28DRAFT_3727 0.48 -1.8 403,328 + EX28DRAFT_3727 0.53 +0.4 403,344 - EX28DRAFT_3727 0.55 +1.3 403,388 - EX28DRAFT_3727 0.58 -0.7 403,421 + EX28DRAFT_3727 0.61 +0.2 403,445 + EX28DRAFT_3727 0.63 -0.6 403,469 - EX28DRAFT_3727 0.65 -0.9 403,471 + EX28DRAFT_3727 0.65 +0.7 403,472 - EX28DRAFT_3727 0.65 -0.5 403,472 - EX28DRAFT_3727 0.65 -0.4 403,602 + EX28DRAFT_3727 0.75 +0.4 403,602 + EX28DRAFT_3727 0.75 +0.8 403,610 + EX28DRAFT_3727 0.76 -1.2 403,612 + EX28DRAFT_3727 0.76 -0.0 403,613 - EX28DRAFT_3727 0.76 -0.9 403,626 + EX28DRAFT_3727 0.77 +1.2 403,693 + EX28DRAFT_3727 0.83 +1.0 403,710 - EX28DRAFT_3727 0.84 +0.7 403,741 + EX28DRAFT_3727 0.86 +1.4 403,844 + -0.4 403,851 + -0.2 403,851 + -1.4 404,096 - EX28DRAFT_3728 0.48 +0.8 404,122 - EX28DRAFT_3728 0.55 -0.2 404,159 - EX28DRAFT_3728 0.65 +0.7 404,230 - EX28DRAFT_3728 0.83 +1.6 404,269 + -1.3 404,269 + -0.3 404,270 - -0.4 404,270 - +0.3 404,301 - -1.1 404,329 - -0.7 404,357 + -0.3 404,503 + EX28DRAFT_3729 0.21 -0.0 404,504 - EX28DRAFT_3729 0.21 +0.5 404,646 - EX28DRAFT_3729 0.37 -1.9 404,856 + EX28DRAFT_3729 0.62 +0.3 404,856 + EX28DRAFT_3729 0.62 -0.4 404,857 - EX28DRAFT_3729 0.62 +7.8
Or see this region's nucleotide sequence