Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3706

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3704 and EX28DRAFT_3705 are separated by 18 nucleotidesEX28DRAFT_3705 and EX28DRAFT_3706 are separated by 10 nucleotidesEX28DRAFT_3706 and EX28DRAFT_3707 are separated by 164 nucleotides EX28DRAFT_3704: EX28DRAFT_3704 - Membrane protein required for beta-lactamase induction, at 374,056 to 374,910 _3704 EX28DRAFT_3705: EX28DRAFT_3705 - Predicted beta-xylosidase, at 374,929 to 375,879 _3705 EX28DRAFT_3706: EX28DRAFT_3706 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 375,890 to 377,287 _3706 EX28DRAFT_3707: EX28DRAFT_3707 - Gamma-aminobutyrate permease and related permeases, at 377,452 to 378,822 _3707 Position (kb) 375 376 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 375.020 kb on + strandat 375.021 kb on - strandat 375.070 kb on + strand, within EX28DRAFT_3705at 375.070 kb on + strand, within EX28DRAFT_3705at 375.070 kb on + strand, within EX28DRAFT_3705at 375.070 kb on + strand, within EX28DRAFT_3705at 375.071 kb on - strand, within EX28DRAFT_3705at 375.071 kb on - strand, within EX28DRAFT_3705at 375.071 kb on - strand, within EX28DRAFT_3705at 375.134 kb on + strand, within EX28DRAFT_3705at 375.135 kb on - strand, within EX28DRAFT_3705at 375.206 kb on - strand, within EX28DRAFT_3705at 375.227 kb on + strand, within EX28DRAFT_3705at 375.228 kb on - strand, within EX28DRAFT_3705at 375.228 kb on - strand, within EX28DRAFT_3705at 375.254 kb on + strand, within EX28DRAFT_3705at 375.254 kb on + strand, within EX28DRAFT_3705at 375.271 kb on - strand, within EX28DRAFT_3705at 375.332 kb on + strand, within EX28DRAFT_3705at 375.399 kb on - strand, within EX28DRAFT_3705at 375.399 kb on - strand, within EX28DRAFT_3705at 375.399 kb on - strand, within EX28DRAFT_3705at 375.495 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.577 kb on - strand, within EX28DRAFT_3705at 375.577 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.638 kb on + strand, within EX28DRAFT_3705at 375.638 kb on + strand, within EX28DRAFT_3705at 375.639 kb on - strand, within EX28DRAFT_3705at 375.639 kb on - strand, within EX28DRAFT_3705at 375.735 kb on + strand, within EX28DRAFT_3705at 375.736 kb on - strand, within EX28DRAFT_3705at 375.806 kb on + strandat 375.806 kb on + strandat 375.809 kb on + strandat 375.827 kb on - strandat 375.891 kb on + strandat 375.892 kb on - strandat 375.892 kb on - strandat 375.892 kb on - strandat 375.896 kb on - strandat 376.032 kb on + strand, within EX28DRAFT_3706at 376.113 kb on + strand, within EX28DRAFT_3706at 376.237 kb on - strand, within EX28DRAFT_3706at 376.308 kb on + strand, within EX28DRAFT_3706at 376.408 kb on + strand, within EX28DRAFT_3706at 376.408 kb on + strand, within EX28DRAFT_3706at 376.409 kb on - strand, within EX28DRAFT_3706at 376.409 kb on - strand, within EX28DRAFT_3706at 376.477 kb on + strand, within EX28DRAFT_3706at 376.525 kb on - strand, within EX28DRAFT_3706at 376.525 kb on - strand, within EX28DRAFT_3706at 376.527 kb on + strand, within EX28DRAFT_3706at 376.527 kb on + strand, within EX28DRAFT_3706at 376.527 kb on + strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.889 kb on + strand, within EX28DRAFT_3706at 376.889 kb on + strand, within EX28DRAFT_3706at 376.899 kb on + strand, within EX28DRAFT_3706at 376.899 kb on + strand, within EX28DRAFT_3706at 376.899 kb on + strand, within EX28DRAFT_3706at 376.899 kb on + strand, within EX28DRAFT_3706at 376.920 kb on + strand, within EX28DRAFT_3706at 376.921 kb on - strand, within EX28DRAFT_3706at 376.942 kb on - strand, within EX28DRAFT_3706at 376.942 kb on - strand, within EX28DRAFT_3706at 376.957 kb on - strand, within EX28DRAFT_3706at 376.960 kb on + strand, within EX28DRAFT_3706at 376.972 kb on + strand, within EX28DRAFT_3706at 376.972 kb on + strand, within EX28DRAFT_3706at 376.974 kb on + strand, within EX28DRAFT_3706at 376.974 kb on + strand, within EX28DRAFT_3706at 377.066 kb on - strand, within EX28DRAFT_3706at 377.095 kb on + strand, within EX28DRAFT_3706at 377.120 kb on + strand, within EX28DRAFT_3706at 377.182 kb on - strandat 377.339 kb on + strandat 377.339 kb on + strandat 377.340 kb on - strandat 377.341 kb on + strandat 377.341 kb on + strandat 377.341 kb on + strandat 377.342 kb on - strandat 377.453 kb on + strandat 377.453 kb on + strandat 377.467 kb on - strandat 377.472 kb on + strandat 377.535 kb on - strandat 377.769 kb on + strand, within EX28DRAFT_3707at 377.770 kb on - strand, within EX28DRAFT_3707at 377.771 kb on + strand, within EX28DRAFT_3707at 377.771 kb on + strand, within EX28DRAFT_3707at 377.772 kb on - strand, within EX28DRAFT_3707at 377.772 kb on - strand, within EX28DRAFT_3707at 377.772 kb on - strand, within EX28DRAFT_3707at 377.772 kb on - strand, within EX28DRAFT_3707at 377.775 kb on + strand, within EX28DRAFT_3707at 377.914 kb on + strand, within EX28DRAFT_3707at 377.914 kb on + strand, within EX28DRAFT_3707at 377.914 kb on + strand, within EX28DRAFT_3707at 377.915 kb on - strand, within EX28DRAFT_3707at 377.915 kb on - strand, within EX28DRAFT_3707at 377.975 kb on - strand, within EX28DRAFT_3707at 378.080 kb on + strand, within EX28DRAFT_3707at 378.080 kb on + strand, within EX28DRAFT_3707at 378.080 kb on + strand, within EX28DRAFT_3707at 378.081 kb on - strand, within EX28DRAFT_3707at 378.081 kb on - strand, within EX28DRAFT_3707at 378.215 kb on - strand, within EX28DRAFT_3707

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
375,020 + +0.7
375,021 - +1.7
375,070 + EX28DRAFT_3705 0.15 +0.4
375,070 + EX28DRAFT_3705 0.15 -0.9
375,070 + EX28DRAFT_3705 0.15 +3.5
375,070 + EX28DRAFT_3705 0.15 +0.1
375,071 - EX28DRAFT_3705 0.15 +0.1
375,071 - EX28DRAFT_3705 0.15 +0.5
375,071 - EX28DRAFT_3705 0.15 +0.4
375,134 + EX28DRAFT_3705 0.22 +0.5
375,135 - EX28DRAFT_3705 0.22 -0.5
375,206 - EX28DRAFT_3705 0.29 -0.6
375,227 + EX28DRAFT_3705 0.31 +0.0
375,228 - EX28DRAFT_3705 0.31 +0.8
375,228 - EX28DRAFT_3705 0.31 +0.8
375,254 + EX28DRAFT_3705 0.34 +0.3
375,254 + EX28DRAFT_3705 0.34 +0.7
375,271 - EX28DRAFT_3705 0.36 -0.3
375,332 + EX28DRAFT_3705 0.42 +0.8
375,399 - EX28DRAFT_3705 0.49 -0.5
375,399 - EX28DRAFT_3705 0.49 +1.5
375,399 - EX28DRAFT_3705 0.49 -0.2
375,495 + EX28DRAFT_3705 0.60 +0.3
375,576 + EX28DRAFT_3705 0.68 -1.0
375,576 + EX28DRAFT_3705 0.68 -0.0
375,576 + EX28DRAFT_3705 0.68 +2.5
375,576 + EX28DRAFT_3705 0.68 +0.1
375,577 - EX28DRAFT_3705 0.68 -1.6
375,577 - EX28DRAFT_3705 0.68 -1.2
375,633 - EX28DRAFT_3705 0.74 -1.6
375,633 - EX28DRAFT_3705 0.74 +1.0
375,633 - EX28DRAFT_3705 0.74 -0.2
375,633 - EX28DRAFT_3705 0.74 -3.4
375,633 - EX28DRAFT_3705 0.74 +0.6
375,633 - EX28DRAFT_3705 0.74 -0.3
375,638 + EX28DRAFT_3705 0.75 -1.7
375,638 + EX28DRAFT_3705 0.75 -0.3
375,639 - EX28DRAFT_3705 0.75 -0.5
375,639 - EX28DRAFT_3705 0.75 -0.7
375,735 + EX28DRAFT_3705 0.85 +2.5
375,736 - EX28DRAFT_3705 0.85 -1.6
375,806 + -1.7
375,806 + +3.1
375,809 + -0.0
375,827 - -1.4
375,891 + +0.8
375,892 - +0.0
375,892 - +0.5
375,892 - +0.7
375,896 - -1.1
376,032 + EX28DRAFT_3706 0.10 -0.1
376,113 + EX28DRAFT_3706 0.16 +0.2
376,237 - EX28DRAFT_3706 0.25 +0.3
376,308 + EX28DRAFT_3706 0.30 -0.1
376,408 + EX28DRAFT_3706 0.37 +1.9
376,408 + EX28DRAFT_3706 0.37 +0.2
376,409 - EX28DRAFT_3706 0.37 -1.0
376,409 - EX28DRAFT_3706 0.37 -0.1
376,477 + EX28DRAFT_3706 0.42 -0.3
376,525 - EX28DRAFT_3706 0.45 +0.6
376,525 - EX28DRAFT_3706 0.45 -0.9
376,527 + EX28DRAFT_3706 0.46 +2.1
376,527 + EX28DRAFT_3706 0.46 -0.2
376,527 + EX28DRAFT_3706 0.46 -0.2
376,528 - EX28DRAFT_3706 0.46 -0.6
376,528 - EX28DRAFT_3706 0.46 -1.9
376,528 - EX28DRAFT_3706 0.46 +1.1
376,528 - EX28DRAFT_3706 0.46 -0.1
376,889 + EX28DRAFT_3706 0.71 +0.8
376,889 + EX28DRAFT_3706 0.71 -0.7
376,899 + EX28DRAFT_3706 0.72 -0.3
376,899 + EX28DRAFT_3706 0.72 -0.3
376,899 + EX28DRAFT_3706 0.72 +0.5
376,899 + EX28DRAFT_3706 0.72 +0.1
376,920 + EX28DRAFT_3706 0.74 +1.4
376,921 - EX28DRAFT_3706 0.74 -1.5
376,942 - EX28DRAFT_3706 0.75 +0.7
376,942 - EX28DRAFT_3706 0.75 -3.2
376,957 - EX28DRAFT_3706 0.76 +0.4
376,960 + EX28DRAFT_3706 0.77 -0.7
376,972 + EX28DRAFT_3706 0.77 -1.5
376,972 + EX28DRAFT_3706 0.77 -0.5
376,974 + EX28DRAFT_3706 0.78 +1.2
376,974 + EX28DRAFT_3706 0.78 -1.2
377,066 - EX28DRAFT_3706 0.84 -0.5
377,095 + EX28DRAFT_3706 0.86 +0.4
377,120 + EX28DRAFT_3706 0.88 +1.3
377,182 - +2.5
377,339 + +0.6
377,339 + -1.7
377,340 - +0.5
377,341 + +1.0
377,341 + +0.1
377,341 + -1.3
377,342 - -1.1
377,453 + +0.6
377,453 + +1.1
377,467 - +0.4
377,472 + -0.4
377,535 - -1.2
377,769 + EX28DRAFT_3707 0.23 +0.3
377,770 - EX28DRAFT_3707 0.23 -0.5
377,771 + EX28DRAFT_3707 0.23 -0.3
377,771 + EX28DRAFT_3707 0.23 -0.8
377,772 - EX28DRAFT_3707 0.23 -1.9
377,772 - EX28DRAFT_3707 0.23 +0.0
377,772 - EX28DRAFT_3707 0.23 -0.7
377,772 - EX28DRAFT_3707 0.23 +3.8
377,775 + EX28DRAFT_3707 0.24 -0.7
377,914 + EX28DRAFT_3707 0.34 -0.2
377,914 + EX28DRAFT_3707 0.34 +3.5
377,914 + EX28DRAFT_3707 0.34 -2.3
377,915 - EX28DRAFT_3707 0.34 +6.1
377,915 - EX28DRAFT_3707 0.34 +0.5
377,975 - EX28DRAFT_3707 0.38 -0.5
378,080 + EX28DRAFT_3707 0.46 +1.3
378,080 + EX28DRAFT_3707 0.46 -0.9
378,080 + EX28DRAFT_3707 0.46 -1.0
378,081 - EX28DRAFT_3707 0.46 +0.2
378,081 - EX28DRAFT_3707 0.46 +0.2
378,215 - EX28DRAFT_3707 0.56 -0.8

Or see this region's nucleotide sequence