Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3561 and EX28DRAFT_3562 overlap by 4 nucleotides EX28DRAFT_3562 and EX28DRAFT_3563 are separated by 148 nucleotides EX28DRAFT_3563 and EX28DRAFT_3564 are separated by 83 nucleotides EX28DRAFT_3564 and EX28DRAFT_3565 are separated by 41 nucleotides
EX28DRAFT_3561: EX28DRAFT_3561 - DNA replication protein, at 225,650 to 226,387
_3561
EX28DRAFT_3562: EX28DRAFT_3562 - hypothetical protein, at 226,384 to 226,929
_3562
EX28DRAFT_3563: EX28DRAFT_3563 - peroxiredoxin, Ohr subfamily, at 227,078 to 227,506
_3563
EX28DRAFT_3564: EX28DRAFT_3564 - Transcriptional regulators, at 227,590 to 228,042
_3564
EX28DRAFT_3565: EX28DRAFT_3565 - transcriptional regulator, TetR family, at 228,084 to 228,725
_3565
Position (kb) 227
228 Strain fitness (log2 ratio) -2
-1
0
1 at 226.971 kb on - strand at 227.037 kb on - strand at 227.045 kb on - strand at 227.045 kb on - strand at 227.076 kb on + strand at 227.077 kb on - strand at 227.167 kb on + strand, within EX28DRAFT_3563 at 227.285 kb on - strand, within EX28DRAFT_3563 at 227.414 kb on + strand, within EX28DRAFT_3563 at 227.415 kb on - strand, within EX28DRAFT_3563 at 227.485 kb on - strand at 227.485 kb on - strand at 227.560 kb on - strand at 227.568 kb on + strand at 227.578 kb on + strand at 227.602 kb on + strand at 227.904 kb on - strand, within EX28DRAFT_3564 at 227.976 kb on - strand, within EX28DRAFT_3564 at 228.187 kb on + strand, within EX28DRAFT_3565 at 228.203 kb on - strand, within EX28DRAFT_3565 at 228.203 kb on - strand, within EX28DRAFT_3565 at 228.222 kb on + strand, within EX28DRAFT_3565 at 228.222 kb on + strand, within EX28DRAFT_3565 at 228.222 kb on + strand, within EX28DRAFT_3565 at 228.353 kb on + strand, within EX28DRAFT_3565 at 228.397 kb on + strand, within EX28DRAFT_3565 at 228.398 kb on - strand, within EX28DRAFT_3565 at 228.398 kb on - strand, within EX28DRAFT_3565
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 226,971 - -0.4 227,037 - -0.3 227,045 - -0.9 227,045 - -0.4 227,076 + +0.5 227,077 - -0.2 227,167 + EX28DRAFT_3563 0.21 -1.2 227,285 - EX28DRAFT_3563 0.48 +0.6 227,414 + EX28DRAFT_3563 0.78 -1.8 227,415 - EX28DRAFT_3563 0.79 -0.4 227,485 - -0.5 227,485 - -0.7 227,560 - -0.6 227,568 + +1.7 227,578 + +1.6 227,602 + -0.1 227,904 - EX28DRAFT_3564 0.69 -0.2 227,976 - EX28DRAFT_3564 0.85 -0.8 228,187 + EX28DRAFT_3565 0.16 +0.6 228,203 - EX28DRAFT_3565 0.19 -2.2 228,203 - EX28DRAFT_3565 0.19 -0.0 228,222 + EX28DRAFT_3565 0.21 -1.2 228,222 + EX28DRAFT_3565 0.21 +0.2 228,222 + EX28DRAFT_3565 0.21 -1.0 228,353 + EX28DRAFT_3565 0.42 +0.5 228,397 + EX28DRAFT_3565 0.49 -1.4 228,398 - EX28DRAFT_3565 0.49 -0.1 228,398 - EX28DRAFT_3565 0.49 +0.9
Or see this region's nucleotide sequence