Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3554

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3553 and EX28DRAFT_3554 overlap by 10 nucleotidesEX28DRAFT_3554 and EX28DRAFT_3555 overlap by 20 nucleotidesEX28DRAFT_3555 and EX28DRAFT_3556 are separated by 2 nucleotides EX28DRAFT_3553: EX28DRAFT_3553 - Uncharacterized secreted protein, at 216,702 to 217,658 _3553 EX28DRAFT_3554: EX28DRAFT_3554 - P pilus assembly protein, porin PapC, at 217,649 to 219,877 _3554 EX28DRAFT_3555: EX28DRAFT_3555 - P pilus assembly protein, chaperone PapD, at 219,858 to 220,634 _3555 EX28DRAFT_3556: EX28DRAFT_3556 - Uncharacterized secreted protein, at 220,637 to 221,131 _3556 Position (kb) 217 218 219 220Strain fitness (log2 ratio) -2 -1 0 1 2 3at 216.788 kb on - strandat 217.055 kb on + strand, within EX28DRAFT_3553at 217.078 kb on + strand, within EX28DRAFT_3553at 217.078 kb on + strand, within EX28DRAFT_3553at 217.213 kb on + strand, within EX28DRAFT_3553at 217.213 kb on + strand, within EX28DRAFT_3553at 217.214 kb on - strand, within EX28DRAFT_3553at 217.214 kb on - strand, within EX28DRAFT_3553at 217.219 kb on + strand, within EX28DRAFT_3553at 217.220 kb on - strand, within EX28DRAFT_3553at 217.220 kb on - strand, within EX28DRAFT_3553at 217.220 kb on - strand, within EX28DRAFT_3553at 217.222 kb on + strand, within EX28DRAFT_3553at 217.222 kb on + strand, within EX28DRAFT_3553at 217.399 kb on + strand, within EX28DRAFT_3553at 217.400 kb on - strand, within EX28DRAFT_3553at 217.568 kb on + strandat 217.569 kb on - strandat 217.636 kb on - strandat 217.682 kb on - strandat 217.780 kb on + strandat 217.781 kb on - strandat 217.901 kb on - strand, within EX28DRAFT_3554at 217.913 kb on + strand, within EX28DRAFT_3554at 218.140 kb on - strand, within EX28DRAFT_3554at 218.264 kb on + strand, within EX28DRAFT_3554at 218.265 kb on - strand, within EX28DRAFT_3554at 218.466 kb on + strand, within EX28DRAFT_3554at 218.524 kb on - strand, within EX28DRAFT_3554at 218.533 kb on + strand, within EX28DRAFT_3554at 218.533 kb on + strand, within EX28DRAFT_3554at 218.928 kb on + strand, within EX28DRAFT_3554at 218.949 kb on + strand, within EX28DRAFT_3554at 218.950 kb on - strand, within EX28DRAFT_3554at 219.035 kb on + strand, within EX28DRAFT_3554at 219.035 kb on + strand, within EX28DRAFT_3554at 219.169 kb on - strand, within EX28DRAFT_3554at 219.282 kb on - strand, within EX28DRAFT_3554at 219.352 kb on + strand, within EX28DRAFT_3554at 219.519 kb on + strand, within EX28DRAFT_3554at 219.539 kb on - strand, within EX28DRAFT_3554at 219.540 kb on + strand, within EX28DRAFT_3554at 219.842 kb on + strandat 219.842 kb on + strandat 219.843 kb on - strandat 219.955 kb on + strand, within EX28DRAFT_3555at 220.030 kb on + strand, within EX28DRAFT_3555at 220.046 kb on + strand, within EX28DRAFT_3555at 220.101 kb on + strand, within EX28DRAFT_3555at 220.101 kb on + strand, within EX28DRAFT_3555at 220.101 kb on + strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.102 kb on - strand, within EX28DRAFT_3555at 220.205 kb on + strand, within EX28DRAFT_3555at 220.340 kb on + strand, within EX28DRAFT_3555at 220.343 kb on + strand, within EX28DRAFT_3555at 220.344 kb on - strand, within EX28DRAFT_3555at 220.451 kb on - strand, within EX28DRAFT_3555at 220.490 kb on + strand, within EX28DRAFT_3555at 220.641 kb on + strandat 220.652 kb on + strandat 220.671 kb on + strandat 220.672 kb on - strandat 220.672 kb on - strandat 220.720 kb on - strand, within EX28DRAFT_3556

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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216,788 - +0.3
217,055 + EX28DRAFT_3553 0.37 -1.1
217,078 + EX28DRAFT_3553 0.39 -0.1
217,078 + EX28DRAFT_3553 0.39 +0.1
217,213 + EX28DRAFT_3553 0.53 +0.7
217,213 + EX28DRAFT_3553 0.53 +0.1
217,214 - EX28DRAFT_3553 0.54 -0.7
217,214 - EX28DRAFT_3553 0.54 -1.5
217,219 + EX28DRAFT_3553 0.54 +0.2
217,220 - EX28DRAFT_3553 0.54 +1.6
217,220 - EX28DRAFT_3553 0.54 -2.1
217,220 - EX28DRAFT_3553 0.54 +0.6
217,222 + EX28DRAFT_3553 0.54 -0.5
217,222 + EX28DRAFT_3553 0.54 -0.5
217,399 + EX28DRAFT_3553 0.73 +2.4
217,400 - EX28DRAFT_3553 0.73 +0.2
217,568 + -0.9
217,569 - +0.5
217,636 - -0.4
217,682 - -1.3
217,780 + +0.9
217,781 - -1.8
217,901 - EX28DRAFT_3554 0.11 +0.2
217,913 + EX28DRAFT_3554 0.12 +0.3
218,140 - EX28DRAFT_3554 0.22 +0.6
218,264 + EX28DRAFT_3554 0.28 -0.5
218,265 - EX28DRAFT_3554 0.28 -1.0
218,466 + EX28DRAFT_3554 0.37 +0.8
218,524 - EX28DRAFT_3554 0.39 -0.5
218,533 + EX28DRAFT_3554 0.40 -1.5
218,533 + EX28DRAFT_3554 0.40 -0.2
218,928 + EX28DRAFT_3554 0.57 +0.2
218,949 + EX28DRAFT_3554 0.58 +0.1
218,950 - EX28DRAFT_3554 0.58 -1.5
219,035 + EX28DRAFT_3554 0.62 -1.4
219,035 + EX28DRAFT_3554 0.62 +0.6
219,169 - EX28DRAFT_3554 0.68 +0.5
219,282 - EX28DRAFT_3554 0.73 +2.0
219,352 + EX28DRAFT_3554 0.76 -0.5
219,519 + EX28DRAFT_3554 0.84 -0.5
219,539 - EX28DRAFT_3554 0.85 -0.2
219,540 + EX28DRAFT_3554 0.85 -1.5
219,842 + +1.1
219,842 + +0.7
219,843 - -1.9
219,955 + EX28DRAFT_3555 0.12 -0.5
220,030 + EX28DRAFT_3555 0.22 +0.5
220,046 + EX28DRAFT_3555 0.24 +0.1
220,101 + EX28DRAFT_3555 0.31 +2.0
220,101 + EX28DRAFT_3555 0.31 -0.8
220,101 + EX28DRAFT_3555 0.31 +0.2
220,102 - EX28DRAFT_3555 0.31 -0.4
220,102 - EX28DRAFT_3555 0.31 +3.7
220,102 - EX28DRAFT_3555 0.31 +0.5
220,102 - EX28DRAFT_3555 0.31 +0.5
220,102 - EX28DRAFT_3555 0.31 -0.0
220,102 - EX28DRAFT_3555 0.31 -0.1
220,205 + EX28DRAFT_3555 0.45 -0.7
220,340 + EX28DRAFT_3555 0.62 -1.5
220,343 + EX28DRAFT_3555 0.62 -0.7
220,344 - EX28DRAFT_3555 0.63 -0.6
220,451 - EX28DRAFT_3555 0.76 -0.3
220,490 + EX28DRAFT_3555 0.81 -2.3
220,641 + -1.1
220,652 + +0.2
220,671 + +0.3
220,672 - -0.7
220,672 - -1.4
220,720 - EX28DRAFT_3556 0.17 +2.3

Or see this region's nucleotide sequence