Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3464

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3462 and EX28DRAFT_3463 are separated by 46 nucleotidesEX28DRAFT_3463 and EX28DRAFT_3464 are separated by 30 nucleotidesEX28DRAFT_3464 and EX28DRAFT_3465 are separated by 106 nucleotidesEX28DRAFT_3465 and EX28DRAFT_3466 are separated by 519 nucleotides EX28DRAFT_3462: EX28DRAFT_3462 - Uncharacterized protein conserved in bacteria, at 136,051 to 136,476 _3462 EX28DRAFT_3463: EX28DRAFT_3463 - Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA, at 136,523 to 137,281 _3463 EX28DRAFT_3464: EX28DRAFT_3464 - hypothetical protein, at 137,312 to 138,034 _3464 EX28DRAFT_3465: EX28DRAFT_3465 - tRNA, at 138,141 to 138,225 _3465 EX28DRAFT_3466: EX28DRAFT_3466 - hypothetical protein, at 138,745 to 139,287 _3466 Position (kb) 137 138 139Strain fitness (log2 ratio) -2 -1 0 1 2 3at 136.333 kb on - strand, within EX28DRAFT_3462at 136.390 kb on + strand, within EX28DRAFT_3462at 136.390 kb on + strand, within EX28DRAFT_3462at 136.390 kb on + strand, within EX28DRAFT_3462at 136.390 kb on + strand, within EX28DRAFT_3462at 136.391 kb on - strand, within EX28DRAFT_3462at 136.441 kb on + strandat 136.540 kb on - strandat 136.540 kb on - strandat 136.594 kb on + strandat 136.595 kb on - strandat 136.687 kb on + strand, within EX28DRAFT_3463at 136.691 kb on + strand, within EX28DRAFT_3463at 136.742 kb on + strand, within EX28DRAFT_3463at 136.861 kb on + strand, within EX28DRAFT_3463at 136.861 kb on + strand, within EX28DRAFT_3463at 136.862 kb on - strand, within EX28DRAFT_3463at 136.938 kb on - strand, within EX28DRAFT_3463at 137.036 kb on + strand, within EX28DRAFT_3463at 137.141 kb on + strand, within EX28DRAFT_3463at 137.150 kb on + strand, within EX28DRAFT_3463at 137.150 kb on + strand, within EX28DRAFT_3463at 137.151 kb on - strand, within EX28DRAFT_3463at 137.185 kb on + strand, within EX28DRAFT_3463at 137.186 kb on - strand, within EX28DRAFT_3463at 137.186 kb on - strand, within EX28DRAFT_3463at 137.199 kb on + strand, within EX28DRAFT_3463at 137.230 kb on + strandat 137.231 kb on - strandat 137.231 kb on - strandat 137.231 kb on - strandat 137.317 kb on + strandat 137.318 kb on - strandat 137.536 kb on + strand, within EX28DRAFT_3464at 137.615 kb on + strand, within EX28DRAFT_3464at 137.615 kb on + strand, within EX28DRAFT_3464at 137.615 kb on + strand, within EX28DRAFT_3464at 137.616 kb on - strand, within EX28DRAFT_3464at 137.659 kb on - strand, within EX28DRAFT_3464at 137.709 kb on + strand, within EX28DRAFT_3464at 137.854 kb on + strand, within EX28DRAFT_3464at 137.855 kb on - strand, within EX28DRAFT_3464at 137.876 kb on + strand, within EX28DRAFT_3464at 137.944 kb on + strand, within EX28DRAFT_3464at 138.108 kb on + strandat 138.285 kb on + strandat 138.310 kb on + strandat 138.310 kb on + strandat 138.343 kb on + strandat 138.343 kb on + strandat 138.365 kb on + strandat 138.365 kb on + strandat 138.365 kb on + strandat 138.366 kb on - strandat 138.366 kb on - strandat 138.369 kb on + strandat 138.370 kb on - strandat 138.386 kb on + strandat 138.386 kb on + strandat 138.387 kb on - strandat 138.482 kb on + strandat 138.483 kb on - strandat 138.493 kb on + strandat 138.493 kb on + strandat 138.504 kb on - strandat 138.516 kb on + strandat 138.516 kb on + strandat 138.517 kb on - strandat 138.517 kb on - strandat 138.534 kb on - strandat 138.540 kb on + strandat 138.642 kb on + strandat 138.660 kb on - strandat 138.668 kb on + strandat 138.668 kb on + strandat 138.669 kb on - strandat 138.698 kb on + strandat 138.698 kb on + strandat 138.698 kb on + strandat 138.698 kb on + strandat 138.699 kb on - strandat 138.721 kb on + strandat 138.721 kb on + strandat 138.721 kb on + strandat 138.721 kb on + strandat 138.722 kb on - strandat 138.774 kb on - strandat 138.835 kb on + strand, within EX28DRAFT_3466at 138.835 kb on + strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.866 kb on - strand, within EX28DRAFT_3466at 138.866 kb on - strand, within EX28DRAFT_3466at 138.866 kb on - strand, within EX28DRAFT_3466at 138.869 kb on + strand, within EX28DRAFT_3466at 138.869 kb on + strand, within EX28DRAFT_3466at 138.895 kb on + strand, within EX28DRAFT_3466at 138.940 kb on + strand, within EX28DRAFT_3466at 138.941 kb on - strand, within EX28DRAFT_3466at 138.941 kb on - strand, within EX28DRAFT_3466at 138.941 kb on - strand, within EX28DRAFT_3466at 138.981 kb on + strand, within EX28DRAFT_3466at 138.986 kb on - strand, within EX28DRAFT_3466

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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136,333 - EX28DRAFT_3462 0.66 -1.1
136,390 + EX28DRAFT_3462 0.80 +0.2
136,390 + EX28DRAFT_3462 0.80 +2.0
136,390 + EX28DRAFT_3462 0.80 -0.7
136,390 + EX28DRAFT_3462 0.80 -0.9
136,391 - EX28DRAFT_3462 0.80 -1.1
136,441 + -1.1
136,540 - -2.0
136,540 - +0.6
136,594 + -0.7
136,595 - +0.3
136,687 + EX28DRAFT_3463 0.22 -2.0
136,691 + EX28DRAFT_3463 0.22 +1.0
136,742 + EX28DRAFT_3463 0.29 +0.2
136,861 + EX28DRAFT_3463 0.45 +2.2
136,861 + EX28DRAFT_3463 0.45 +0.9
136,862 - EX28DRAFT_3463 0.45 +0.2
136,938 - EX28DRAFT_3463 0.55 +0.4
137,036 + EX28DRAFT_3463 0.68 -0.8
137,141 + EX28DRAFT_3463 0.81 +2.2
137,150 + EX28DRAFT_3463 0.83 -0.4
137,150 + EX28DRAFT_3463 0.83 -0.2
137,151 - EX28DRAFT_3463 0.83 -1.2
137,185 + EX28DRAFT_3463 0.87 +0.3
137,186 - EX28DRAFT_3463 0.87 +0.2
137,186 - EX28DRAFT_3463 0.87 -0.9
137,199 + EX28DRAFT_3463 0.89 +0.2
137,230 + -0.9
137,231 - -2.1
137,231 - -1.3
137,231 - -0.6
137,317 + +1.6
137,318 - +2.9
137,536 + EX28DRAFT_3464 0.31 -0.1
137,615 + EX28DRAFT_3464 0.42 +0.5
137,615 + EX28DRAFT_3464 0.42 -2.4
137,615 + EX28DRAFT_3464 0.42 -0.1
137,616 - EX28DRAFT_3464 0.42 -0.2
137,659 - EX28DRAFT_3464 0.48 -0.4
137,709 + EX28DRAFT_3464 0.55 +1.7
137,854 + EX28DRAFT_3464 0.75 -0.0
137,855 - EX28DRAFT_3464 0.75 -2.1
137,876 + EX28DRAFT_3464 0.78 -2.5
137,944 + EX28DRAFT_3464 0.87 -1.9
138,108 + -2.7
138,285 + -1.8
138,310 + -0.1
138,310 + -0.1
138,343 + -0.9
138,343 + -0.0
138,365 + -0.2
138,365 + -2.4
138,365 + -0.0
138,366 - +0.2
138,366 - +0.1
138,369 + +0.1
138,370 - -0.9
138,386 + +0.1
138,386 + -1.1
138,387 - -1.4
138,482 + +0.9
138,483 - -1.4
138,493 + -0.7
138,493 + -1.1
138,504 - +0.7
138,516 + -2.1
138,516 + -0.4
138,517 - +0.1
138,517 - +1.9
138,534 - +0.1
138,540 + +0.1
138,642 + +1.8
138,660 - +0.9
138,668 + +1.6
138,668 + -1.8
138,669 - -0.2
138,698 + +0.3
138,698 + -1.1
138,698 + -1.3
138,698 + -0.1
138,699 - +1.1
138,721 + +0.6
138,721 + +0.6
138,721 + +0.1
138,721 + -0.0
138,722 - +0.6
138,774 - +0.3
138,835 + EX28DRAFT_3466 0.17 -1.6
138,835 + EX28DRAFT_3466 0.17 +0.4
138,836 - EX28DRAFT_3466 0.17 +0.1
138,836 - EX28DRAFT_3466 0.17 -0.4
138,836 - EX28DRAFT_3466 0.17 -0.3
138,836 - EX28DRAFT_3466 0.17 +0.3
138,836 - EX28DRAFT_3466 0.17 -1.0
138,866 - EX28DRAFT_3466 0.22 -1.1
138,866 - EX28DRAFT_3466 0.22 +0.1
138,866 - EX28DRAFT_3466 0.22 +1.0
138,869 + EX28DRAFT_3466 0.23 +0.3
138,869 + EX28DRAFT_3466 0.23 +0.8
138,895 + EX28DRAFT_3466 0.28 -0.6
138,940 + EX28DRAFT_3466 0.36 +0.4
138,941 - EX28DRAFT_3466 0.36 -2.6
138,941 - EX28DRAFT_3466 0.36 +1.5
138,941 - EX28DRAFT_3466 0.36 -0.4
138,981 + EX28DRAFT_3466 0.43 +1.5
138,986 - EX28DRAFT_3466 0.44 +0.0

Or see this region's nucleotide sequence