Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3456

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3455 and EX28DRAFT_3456 are separated by 226 nucleotidesEX28DRAFT_3456 and EX28DRAFT_3457 are separated by 11 nucleotides EX28DRAFT_3455: EX28DRAFT_3455 - putative dehydratase, YjhG/YagF family, at 127,645 to 129,612 _3455 EX28DRAFT_3456: EX28DRAFT_3456 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 129,839 to 131,221 _3456 EX28DRAFT_3457: EX28DRAFT_3457 - Beta-xylosidase, at 131,233 to 132,843 _3457 Position (kb) 129 130 131 132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 129.043 kb on + strand, within EX28DRAFT_3455at 129.093 kb on + strand, within EX28DRAFT_3455at 129.181 kb on + strand, within EX28DRAFT_3455at 129.208 kb on - strand, within EX28DRAFT_3455at 129.208 kb on - strand, within EX28DRAFT_3455at 129.350 kb on + strand, within EX28DRAFT_3455at 129.371 kb on + strand, within EX28DRAFT_3455at 129.819 kb on + strandat 129.820 kb on - strandat 129.824 kb on - strandat 129.850 kb on - strandat 129.969 kb on + strandat 130.163 kb on + strand, within EX28DRAFT_3456at 130.163 kb on + strand, within EX28DRAFT_3456at 130.163 kb on + strand, within EX28DRAFT_3456at 130.163 kb on + strand, within EX28DRAFT_3456at 130.163 kb on + strand, within EX28DRAFT_3456at 130.164 kb on - strand, within EX28DRAFT_3456at 130.164 kb on - strand, within EX28DRAFT_3456at 130.178 kb on + strand, within EX28DRAFT_3456at 130.178 kb on + strand, within EX28DRAFT_3456at 130.178 kb on + strand, within EX28DRAFT_3456at 130.179 kb on - strand, within EX28DRAFT_3456at 130.179 kb on - strand, within EX28DRAFT_3456at 130.424 kb on + strand, within EX28DRAFT_3456at 130.445 kb on - strand, within EX28DRAFT_3456at 130.531 kb on + strand, within EX28DRAFT_3456at 130.532 kb on - strand, within EX28DRAFT_3456at 130.532 kb on - strand, within EX28DRAFT_3456at 130.604 kb on + strand, within EX28DRAFT_3456at 130.604 kb on + strand, within EX28DRAFT_3456at 130.604 kb on + strand, within EX28DRAFT_3456at 130.641 kb on + strand, within EX28DRAFT_3456at 130.642 kb on - strand, within EX28DRAFT_3456at 130.932 kb on - strand, within EX28DRAFT_3456at 130.994 kb on + strand, within EX28DRAFT_3456at 131.143 kb on + strandat 131.302 kb on + strandat 131.302 kb on + strandat 131.303 kb on - strandat 131.303 kb on - strandat 131.350 kb on + strandat 131.350 kb on + strandat 131.350 kb on + strandat 131.350 kb on + strandat 131.467 kb on + strand, within EX28DRAFT_3457at 131.468 kb on - strand, within EX28DRAFT_3457at 131.478 kb on + strand, within EX28DRAFT_3457at 131.542 kb on + strand, within EX28DRAFT_3457at 131.543 kb on - strand, within EX28DRAFT_3457at 131.543 kb on - strand, within EX28DRAFT_3457at 131.543 kb on - strand, within EX28DRAFT_3457at 131.648 kb on - strand, within EX28DRAFT_3457at 131.650 kb on + strand, within EX28DRAFT_3457at 131.650 kb on + strand, within EX28DRAFT_3457at 131.651 kb on - strand, within EX28DRAFT_3457at 131.651 kb on - strand, within EX28DRAFT_3457at 131.652 kb on + strand, within EX28DRAFT_3457at 131.652 kb on + strand, within EX28DRAFT_3457at 131.652 kb on + strand, within EX28DRAFT_3457at 131.653 kb on - strand, within EX28DRAFT_3457at 131.653 kb on - strand, within EX28DRAFT_3457at 131.653 kb on - strand, within EX28DRAFT_3457at 131.783 kb on - strand, within EX28DRAFT_3457at 131.821 kb on + strand, within EX28DRAFT_3457at 131.824 kb on + strand, within EX28DRAFT_3457at 131.825 kb on - strand, within EX28DRAFT_3457at 132.020 kb on - strand, within EX28DRAFT_3457at 132.083 kb on - strand, within EX28DRAFT_3457

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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129,043 + EX28DRAFT_3455 0.71 +0.2
129,093 + EX28DRAFT_3455 0.74 -1.0
129,181 + EX28DRAFT_3455 0.78 -2.6
129,208 - EX28DRAFT_3455 0.79 +0.5
129,208 - EX28DRAFT_3455 0.79 +0.3
129,350 + EX28DRAFT_3455 0.87 +1.6
129,371 + EX28DRAFT_3455 0.88 +0.5
129,819 + +1.6
129,820 - -0.9
129,824 - -0.6
129,850 - +0.2
129,969 + +1.1
130,163 + EX28DRAFT_3456 0.23 +1.4
130,163 + EX28DRAFT_3456 0.23 +0.5
130,163 + EX28DRAFT_3456 0.23 -0.7
130,163 + EX28DRAFT_3456 0.23 -1.6
130,163 + EX28DRAFT_3456 0.23 +0.0
130,164 - EX28DRAFT_3456 0.23 -4.3
130,164 - EX28DRAFT_3456 0.23 -0.7
130,178 + EX28DRAFT_3456 0.25 +0.2
130,178 + EX28DRAFT_3456 0.25 +0.5
130,178 + EX28DRAFT_3456 0.25 -0.3
130,179 - EX28DRAFT_3456 0.25 -0.1
130,179 - EX28DRAFT_3456 0.25 -0.2
130,424 + EX28DRAFT_3456 0.42 -1.4
130,445 - EX28DRAFT_3456 0.44 -0.2
130,531 + EX28DRAFT_3456 0.50 +1.5
130,532 - EX28DRAFT_3456 0.50 +1.3
130,532 - EX28DRAFT_3456 0.50 +0.0
130,604 + EX28DRAFT_3456 0.55 -2.2
130,604 + EX28DRAFT_3456 0.55 -1.6
130,604 + EX28DRAFT_3456 0.55 +0.0
130,641 + EX28DRAFT_3456 0.58 +0.0
130,642 - EX28DRAFT_3456 0.58 -0.6
130,932 - EX28DRAFT_3456 0.79 +3.9
130,994 + EX28DRAFT_3456 0.84 +0.4
131,143 + -1.1
131,302 + +0.5
131,302 + -1.3
131,303 - +0.4
131,303 - -0.7
131,350 + -1.0
131,350 + +2.6
131,350 + -0.4
131,350 + -1.0
131,467 + EX28DRAFT_3457 0.15 -1.0
131,468 - EX28DRAFT_3457 0.15 +1.6
131,478 + EX28DRAFT_3457 0.15 -1.1
131,542 + EX28DRAFT_3457 0.19 +0.9
131,543 - EX28DRAFT_3457 0.19 +0.0
131,543 - EX28DRAFT_3457 0.19 +0.1
131,543 - EX28DRAFT_3457 0.19 -1.8
131,648 - EX28DRAFT_3457 0.26 -0.5
131,650 + EX28DRAFT_3457 0.26 -1.0
131,650 + EX28DRAFT_3457 0.26 +3.6
131,651 - EX28DRAFT_3457 0.26 +1.2
131,651 - EX28DRAFT_3457 0.26 -0.6
131,652 + EX28DRAFT_3457 0.26 +0.4
131,652 + EX28DRAFT_3457 0.26 +0.6
131,652 + EX28DRAFT_3457 0.26 +0.4
131,653 - EX28DRAFT_3457 0.26 -0.4
131,653 - EX28DRAFT_3457 0.26 -0.4
131,653 - EX28DRAFT_3457 0.26 -3.9
131,783 - EX28DRAFT_3457 0.34 +0.4
131,821 + EX28DRAFT_3457 0.36 -0.9
131,824 + EX28DRAFT_3457 0.37 +1.7
131,825 - EX28DRAFT_3457 0.37 +1.4
132,020 - EX28DRAFT_3457 0.49 +2.6
132,083 - EX28DRAFT_3457 0.53 -0.6

Or see this region's nucleotide sequence