Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3412 and EX28DRAFT_3413 are separated by 309 nucleotides EX28DRAFT_3413 and EX28DRAFT_3414 are separated by 133 nucleotides
EX28DRAFT_3412: EX28DRAFT_3412 - Inorganic pyrophosphatase, at 82,754 to 83,284
_3412
EX28DRAFT_3413: EX28DRAFT_3413 - ABC-type sugar transport system, periplasmic component, at 83,594 to 84,550
_3413
EX28DRAFT_3414: EX28DRAFT_3414 - ABC-type sugar transport system, ATPase component, at 84,684 to 86,186
_3414
Position (kb) 83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 82.755 kb on + strand at 83.505 kb on + strand at 83.506 kb on - strand at 83.522 kb on + strand at 83.536 kb on + strand at 83.536 kb on + strand at 83.536 kb on + strand at 83.537 kb on - strand at 83.644 kb on + strand at 83.942 kb on - strand, within EX28DRAFT_3413 at 83.957 kb on + strand, within EX28DRAFT_3413 at 83.957 kb on + strand, within EX28DRAFT_3413 at 83.957 kb on + strand, within EX28DRAFT_3413 at 83.958 kb on - strand, within EX28DRAFT_3413 at 83.958 kb on - strand, within EX28DRAFT_3413 at 83.959 kb on + strand, within EX28DRAFT_3413 at 83.959 kb on + strand, within EX28DRAFT_3413 at 84.286 kb on + strand, within EX28DRAFT_3413 at 84.287 kb on - strand, within EX28DRAFT_3413 at 84.287 kb on - strand, within EX28DRAFT_3413 at 84.317 kb on - strand, within EX28DRAFT_3413 at 84.354 kb on - strand, within EX28DRAFT_3413 at 84.354 kb on - strand, within EX28DRAFT_3413 at 84.494 kb on + strand at 84.494 kb on + strand at 84.495 kb on - strand at 84.549 kb on - strand at 84.840 kb on - strand, within EX28DRAFT_3414 at 84.858 kb on + strand, within EX28DRAFT_3414 at 84.977 kb on + strand, within EX28DRAFT_3414 at 84.977 kb on + strand, within EX28DRAFT_3414 at 84.978 kb on - strand, within EX28DRAFT_3414 at 85.181 kb on - strand, within EX28DRAFT_3414 at 85.181 kb on - strand, within EX28DRAFT_3414 at 85.306 kb on + strand, within EX28DRAFT_3414 at 85.307 kb on - strand, within EX28DRAFT_3414 at 85.307 kb on - strand, within EX28DRAFT_3414 at 85.308 kb on + strand, within EX28DRAFT_3414 at 85.308 kb on + strand, within EX28DRAFT_3414 at 85.308 kb on + strand, within EX28DRAFT_3414 at 85.309 kb on - strand, within EX28DRAFT_3414 at 85.309 kb on - strand, within EX28DRAFT_3414 at 85.309 kb on - strand, within EX28DRAFT_3414 at 85.309 kb on - strand, within EX28DRAFT_3414 at 85.309 kb on - strand, within EX28DRAFT_3414 at 85.309 kb on - strand, within EX28DRAFT_3414 at 85.316 kb on - strand, within EX28DRAFT_3414 at 85.316 kb on - strand, within EX28DRAFT_3414
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 82,755 + -0.0 83,505 + -0.7 83,506 - +0.9 83,522 + -2.3 83,536 + -0.2 83,536 + +0.8 83,536 + +3.0 83,537 - -0.2 83,644 + +2.9 83,942 - EX28DRAFT_3413 0.36 +0.4 83,957 + EX28DRAFT_3413 0.38 -1.0 83,957 + EX28DRAFT_3413 0.38 -0.0 83,957 + EX28DRAFT_3413 0.38 -0.3 83,958 - EX28DRAFT_3413 0.38 -0.9 83,958 - EX28DRAFT_3413 0.38 -1.0 83,959 + EX28DRAFT_3413 0.38 +0.2 83,959 + EX28DRAFT_3413 0.38 -0.5 84,286 + EX28DRAFT_3413 0.72 +0.1 84,287 - EX28DRAFT_3413 0.72 -0.7 84,287 - EX28DRAFT_3413 0.72 -0.4 84,317 - EX28DRAFT_3413 0.76 +1.1 84,354 - EX28DRAFT_3413 0.79 -0.2 84,354 - EX28DRAFT_3413 0.79 -0.1 84,494 + -0.6 84,494 + -1.4 84,495 - +2.6 84,549 - +0.6 84,840 - EX28DRAFT_3414 0.10 -0.0 84,858 + EX28DRAFT_3414 0.12 -0.5 84,977 + EX28DRAFT_3414 0.19 +0.7 84,977 + EX28DRAFT_3414 0.19 +1.1 84,978 - EX28DRAFT_3414 0.20 +0.3 85,181 - EX28DRAFT_3414 0.33 +0.5 85,181 - EX28DRAFT_3414 0.33 -0.4 85,306 + EX28DRAFT_3414 0.41 -0.8 85,307 - EX28DRAFT_3414 0.41 +0.7 85,307 - EX28DRAFT_3414 0.41 -0.2 85,308 + EX28DRAFT_3414 0.42 +1.0 85,308 + EX28DRAFT_3414 0.42 -0.4 85,308 + EX28DRAFT_3414 0.42 +0.1 85,309 - EX28DRAFT_3414 0.42 +0.2 85,309 - EX28DRAFT_3414 0.42 -0.4 85,309 - EX28DRAFT_3414 0.42 +0.0 85,309 - EX28DRAFT_3414 0.42 +1.9 85,309 - EX28DRAFT_3414 0.42 -1.6 85,309 - EX28DRAFT_3414 0.42 -1.4 85,316 - EX28DRAFT_3414 0.42 -1.3 85,316 - EX28DRAFT_3414 0.42 +2.7
Or see this region's nucleotide sequence