Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3378 and EX28DRAFT_3379 are separated by 192 nucleotides EX28DRAFT_3379 and EX28DRAFT_3380 overlap by 4 nucleotides
EX28DRAFT_3378: EX28DRAFT_3378 - Arabinose efflux permease, at 47,238 to 48,512
_3378
EX28DRAFT_3379: EX28DRAFT_3379 - Acyl-CoA dehydrogenases, at 48,705 to 50,327
_3379
EX28DRAFT_3380: EX28DRAFT_3380 - Methyl-accepting chemotaxis protein, at 50,324 to 52,255
_3380
Position (kb) 48
49
50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 47.771 kb on - strand, within EX28DRAFT_3378 at 47.862 kb on - strand, within EX28DRAFT_3378 at 48.167 kb on + strand, within EX28DRAFT_3378 at 48.168 kb on - strand, within EX28DRAFT_3378 at 48.170 kb on + strand, within EX28DRAFT_3378 at 48.352 kb on + strand, within EX28DRAFT_3378 at 48.353 kb on - strand, within EX28DRAFT_3378 at 48.353 kb on - strand, within EX28DRAFT_3378 at 48.353 kb on - strand, within EX28DRAFT_3378 at 48.483 kb on + strand at 48.484 kb on - strand at 48.484 kb on - strand at 48.526 kb on + strand at 48.670 kb on - strand at 48.673 kb on + strand at 48.674 kb on - strand at 48.854 kb on - strand at 49.327 kb on - strand, within EX28DRAFT_3379 at 49.343 kb on + strand, within EX28DRAFT_3379 at 49.343 kb on + strand, within EX28DRAFT_3379 at 49.659 kb on + strand, within EX28DRAFT_3379 at 49.660 kb on - strand, within EX28DRAFT_3379 at 49.660 kb on - strand, within EX28DRAFT_3379 at 49.726 kb on + strand, within EX28DRAFT_3379 at 49.862 kb on + strand, within EX28DRAFT_3379 at 49.971 kb on - strand, within EX28DRAFT_3379 at 49.991 kb on + strand, within EX28DRAFT_3379 at 49.992 kb on - strand, within EX28DRAFT_3379 at 50.130 kb on - strand, within EX28DRAFT_3379 at 50.428 kb on + strand at 50.429 kb on - strand at 50.534 kb on - strand, within EX28DRAFT_3380 at 50.624 kb on + strand, within EX28DRAFT_3380 at 51.118 kb on + strand, within EX28DRAFT_3380 at 51.119 kb on - strand, within EX28DRAFT_3380 at 51.119 kb on - strand, within EX28DRAFT_3380
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 47,771 - EX28DRAFT_3378 0.42 -0.4 47,862 - EX28DRAFT_3378 0.49 +0.2 48,167 + EX28DRAFT_3378 0.73 +1.6 48,168 - EX28DRAFT_3378 0.73 +1.9 48,170 + EX28DRAFT_3378 0.73 +0.5 48,352 + EX28DRAFT_3378 0.87 +0.6 48,353 - EX28DRAFT_3378 0.87 +2.0 48,353 - EX28DRAFT_3378 0.87 +1.1 48,353 - EX28DRAFT_3378 0.87 -0.0 48,483 + -0.0 48,484 - +0.2 48,484 - +0.1 48,526 + +0.1 48,670 - -0.0 48,673 + -2.8 48,674 - -1.7 48,854 - -0.0 49,327 - EX28DRAFT_3379 0.38 -0.1 49,343 + EX28DRAFT_3379 0.39 +0.6 49,343 + EX28DRAFT_3379 0.39 -0.7 49,659 + EX28DRAFT_3379 0.59 -0.8 49,660 - EX28DRAFT_3379 0.59 -0.2 49,660 - EX28DRAFT_3379 0.59 -1.5 49,726 + EX28DRAFT_3379 0.63 -0.9 49,862 + EX28DRAFT_3379 0.71 -0.2 49,971 - EX28DRAFT_3379 0.78 +0.4 49,991 + EX28DRAFT_3379 0.79 -0.3 49,992 - EX28DRAFT_3379 0.79 -0.6 50,130 - EX28DRAFT_3379 0.88 -0.4 50,428 + +0.4 50,429 - -1.2 50,534 - EX28DRAFT_3380 0.11 +0.2 50,624 + EX28DRAFT_3380 0.16 -0.3 51,118 + EX28DRAFT_3380 0.41 -1.7 51,119 - EX28DRAFT_3380 0.41 -0.4 51,119 - EX28DRAFT_3380 0.41 -2.1
Or see this region's nucleotide sequence