Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3333 and EX28DRAFT_3334 overlap by 25 nucleotides EX28DRAFT_3334 and EX28DRAFT_3335 are separated by 113 nucleotides EX28DRAFT_3335 and EX28DRAFT_3336 are separated by 115 nucleotides
EX28DRAFT_3333: EX28DRAFT_3333 - Thiol:disulfide interchange protein, at 2,937 to 4,652
_3333
EX28DRAFT_3334: EX28DRAFT_3334 - Uncharacterized protein involved in tolerance to divalent cations, at 4,628 to 4,951
_3334
EX28DRAFT_3335: EX28DRAFT_3335 - anaerobic c4-dicarboxylate membrane transporter family protein, at 5,065 to 6,366
_3335
EX28DRAFT_3336: EX28DRAFT_3336 - aspartate ammonia-lyase, at 6,482 to 7,918
_3336
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.073 kb on - strand, within EX28DRAFT_3333 at 4.215 kb on - strand, within EX28DRAFT_3333 at 4.354 kb on - strand, within EX28DRAFT_3333 at 4.354 kb on - strand, within EX28DRAFT_3333 at 4.477 kb on + strand, within EX28DRAFT_3333 at 4.477 kb on + strand, within EX28DRAFT_3333 at 4.477 kb on + strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.481 kb on - strand at 4.502 kb on + strand at 4.660 kb on - strand at 4.818 kb on + strand, within EX28DRAFT_3334 at 4.818 kb on + strand, within EX28DRAFT_3334 at 4.983 kb on + strand at 4.983 kb on + strand at 4.983 kb on + strand at 4.983 kb on + strand at 4.983 kb on + strand at 4.984 kb on - strand at 4.984 kb on - strand at 4.984 kb on - strand at 4.984 kb on - strand at 4.986 kb on - strand at 5.039 kb on + strand at 5.040 kb on - strand at 5.043 kb on + strand at 5.066 kb on + strand at 5.156 kb on + strand at 5.157 kb on - strand at 5.157 kb on - strand at 5.381 kb on + strand, within EX28DRAFT_3335 at 5.442 kb on + strand, within EX28DRAFT_3335 at 5.442 kb on + strand, within EX28DRAFT_3335 at 5.649 kb on - strand, within EX28DRAFT_3335 at 5.873 kb on + strand, within EX28DRAFT_3335 at 5.874 kb on - strand, within EX28DRAFT_3335 at 6.103 kb on - strand, within EX28DRAFT_3335 at 6.107 kb on + strand, within EX28DRAFT_3335 at 6.107 kb on + strand, within EX28DRAFT_3335 at 6.130 kb on - strand, within EX28DRAFT_3335 at 6.153 kb on - strand, within EX28DRAFT_3335 at 6.195 kb on + strand, within EX28DRAFT_3335 at 6.195 kb on + strand, within EX28DRAFT_3335 at 6.255 kb on + strand at 6.262 kb on - strand at 6.386 kb on + strand at 6.462 kb on - strand at 6.502 kb on + strand at 6.503 kb on - strand at 6.504 kb on + strand at 6.518 kb on - strand at 6.518 kb on - strand at 6.519 kb on + strand at 6.519 kb on + strand at 6.520 kb on - strand at 6.520 kb on - strand at 6.553 kb on + strand at 6.605 kb on + strand at 6.678 kb on + strand, within EX28DRAFT_3336 at 6.700 kb on + strand, within EX28DRAFT_3336 at 6.702 kb on + strand, within EX28DRAFT_3336 at 6.703 kb on - strand, within EX28DRAFT_3336 at 6.703 kb on - strand, within EX28DRAFT_3336 at 6.708 kb on + strand, within EX28DRAFT_3336 at 6.708 kb on + strand, within EX28DRAFT_3336 at 6.709 kb on - strand, within EX28DRAFT_3336 at 6.709 kb on - strand, within EX28DRAFT_3336 at 6.709 kb on - strand, within EX28DRAFT_3336 at 6.878 kb on - strand, within EX28DRAFT_3336 at 6.878 kb on - strand, within EX28DRAFT_3336 at 7.079 kb on + strand, within EX28DRAFT_3336 at 7.292 kb on + strand, within EX28DRAFT_3336 at 7.292 kb on + strand, within EX28DRAFT_3336 at 7.293 kb on - strand, within EX28DRAFT_3336 at 7.293 kb on - strand, within EX28DRAFT_3336
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 4,073 - EX28DRAFT_3333 0.66 +1.2 4,215 - EX28DRAFT_3333 0.74 +0.9 4,354 - EX28DRAFT_3333 0.83 -0.4 4,354 - EX28DRAFT_3333 0.83 -0.2 4,477 + EX28DRAFT_3333 0.90 -0.0 4,477 + EX28DRAFT_3333 0.90 +1.0 4,477 + EX28DRAFT_3333 0.90 +1.1 4,478 - EX28DRAFT_3333 0.90 +0.0 4,478 - EX28DRAFT_3333 0.90 +0.6 4,478 - EX28DRAFT_3333 0.90 -1.8 4,478 - EX28DRAFT_3333 0.90 -3.5 4,478 - EX28DRAFT_3333 0.90 +0.1 4,478 - EX28DRAFT_3333 0.90 -0.1 4,478 - EX28DRAFT_3333 0.90 +0.6 4,481 - +0.5 4,502 + +0.3 4,660 - -0.7 4,818 + EX28DRAFT_3334 0.59 -0.0 4,818 + EX28DRAFT_3334 0.59 +0.3 4,983 + -1.1 4,983 + -1.0 4,983 + -0.0 4,983 + -0.5 4,983 + +1.0 4,984 - -1.4 4,984 - +2.6 4,984 - -1.5 4,984 - -0.5 4,986 - -1.5 5,039 + +2.7 5,040 - -1.7 5,043 + -0.9 5,066 + -0.5 5,156 + +1.7 5,157 - +0.4 5,157 - +0.1 5,381 + EX28DRAFT_3335 0.24 +0.8 5,442 + EX28DRAFT_3335 0.29 -1.1 5,442 + EX28DRAFT_3335 0.29 -0.5 5,649 - EX28DRAFT_3335 0.45 -0.1 5,873 + EX28DRAFT_3335 0.62 +0.2 5,874 - EX28DRAFT_3335 0.62 -1.0 6,103 - EX28DRAFT_3335 0.80 +0.1 6,107 + EX28DRAFT_3335 0.80 -0.0 6,107 + EX28DRAFT_3335 0.80 -0.6 6,130 - EX28DRAFT_3335 0.82 -0.5 6,153 - EX28DRAFT_3335 0.84 +0.4 6,195 + EX28DRAFT_3335 0.87 -1.4 6,195 + EX28DRAFT_3335 0.87 +0.7 6,255 + +0.0 6,262 - +1.1 6,386 + -0.3 6,462 - -1.3 6,502 + +1.1 6,503 - -0.3 6,504 + -1.4 6,518 - -1.1 6,518 - -0.8 6,519 + -3.2 6,519 + +2.6 6,520 - -1.3 6,520 - -0.5 6,553 + -3.2 6,605 + -1.0 6,678 + EX28DRAFT_3336 0.14 -1.9 6,700 + EX28DRAFT_3336 0.15 -0.5 6,702 + EX28DRAFT_3336 0.15 -0.5 6,703 - EX28DRAFT_3336 0.15 -2.5 6,703 - EX28DRAFT_3336 0.15 -1.8 6,708 + EX28DRAFT_3336 0.16 -0.4 6,708 + EX28DRAFT_3336 0.16 -1.4 6,709 - EX28DRAFT_3336 0.16 -3.4 6,709 - EX28DRAFT_3336 0.16 -0.9 6,709 - EX28DRAFT_3336 0.16 -1.2 6,878 - EX28DRAFT_3336 0.28 -1.0 6,878 - EX28DRAFT_3336 0.28 -2.2 7,079 + EX28DRAFT_3336 0.42 -0.7 7,292 + EX28DRAFT_3336 0.56 -0.9 7,292 + EX28DRAFT_3336 0.56 -1.9 7,293 - EX28DRAFT_3336 0.56 -0.4 7,293 - EX28DRAFT_3336 0.56 -2.1
Or see this region's nucleotide sequence