Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3329

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3327 and EX28DRAFT_3328 are separated by 73 nucleotidesEX28DRAFT_3328 and EX28DRAFT_3329 are separated by 236 nucleotidesEX28DRAFT_3329 and EX28DRAFT_3330 are separated by 169 nucleotides EX28DRAFT_3327: EX28DRAFT_3327 - 23S, at 1 to 172 _3327 EX28DRAFT_3328: EX28DRAFT_3328 - 5S, at 246 to 361 _3328 EX28DRAFT_3329: EX28DRAFT_3329 - tRNA, at 598 to 673 _3329 EX28DRAFT_3330: EX28DRAFT_3330 - AraC-type DNA-binding domain-containing proteins, at 843 to 1,688 _3330 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.368 kb on + strandat 0.461 kb on + strandat 0.547 kb on + strandat 0.547 kb on + strandat 0.547 kb on + strandat 0.548 kb on - strandat 0.548 kb on - strandat 0.548 kb on - strandat 0.548 kb on - strandat 0.548 kb on - strandat 0.548 kb on - strandat 0.548 kb on - strandat 0.550 kb on - strandat 0.716 kb on + strandat 0.809 kb on - strandat 0.899 kb on + strandat 0.945 kb on - strand, within EX28DRAFT_3330at 0.948 kb on + strand, within EX28DRAFT_3330at 0.949 kb on - strand, within EX28DRAFT_3330at 1.085 kb on + strand, within EX28DRAFT_3330at 1.085 kb on + strand, within EX28DRAFT_3330at 1.089 kb on + strand, within EX28DRAFT_3330at 1.101 kb on + strand, within EX28DRAFT_3330at 1.102 kb on - strand, within EX28DRAFT_3330at 1.102 kb on - strand, within EX28DRAFT_3330at 1.102 kb on - strand, within EX28DRAFT_3330at 1.102 kb on - strand, within EX28DRAFT_3330at 1.144 kb on - strand, within EX28DRAFT_3330at 1.164 kb on + strand, within EX28DRAFT_3330at 1.164 kb on + strand, within EX28DRAFT_3330at 1.165 kb on - strand, within EX28DRAFT_3330at 1.330 kb on + strand, within EX28DRAFT_3330at 1.331 kb on - strand, within EX28DRAFT_3330at 1.343 kb on - strand, within EX28DRAFT_3330at 1.503 kb on - strand, within EX28DRAFT_3330at 1.624 kb on - strandat 1.628 kb on + strandat 1.629 kb on - strandat 1.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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368 + +0.7
461 + -1.9
547 + -0.1
547 + +0.8
547 + +0.1
548 - +0.5
548 - -0.5
548 - -0.5
548 - -0.5
548 - -0.1
548 - +0.7
548 - +0.6
550 - -1.4
716 + -2.1
809 - -1.2
899 + +1.3
945 - EX28DRAFT_3330 0.12 -0.1
948 + EX28DRAFT_3330 0.12 +0.4
949 - EX28DRAFT_3330 0.13 -0.4
1,085 + EX28DRAFT_3330 0.29 -1.4
1,085 + EX28DRAFT_3330 0.29 +0.2
1,089 + EX28DRAFT_3330 0.29 +2.7
1,101 + EX28DRAFT_3330 0.30 -1.2
1,102 - EX28DRAFT_3330 0.31 +0.4
1,102 - EX28DRAFT_3330 0.31 -0.1
1,102 - EX28DRAFT_3330 0.31 -1.0
1,102 - EX28DRAFT_3330 0.31 -0.7
1,144 - EX28DRAFT_3330 0.36 +3.6
1,164 + EX28DRAFT_3330 0.38 +0.4
1,164 + EX28DRAFT_3330 0.38 +0.4
1,165 - EX28DRAFT_3330 0.38 +0.4
1,330 + EX28DRAFT_3330 0.58 -1.6
1,331 - EX28DRAFT_3330 0.58 -1.5
1,343 - EX28DRAFT_3330 0.59 +1.6
1,503 - EX28DRAFT_3330 0.78 -2.7
1,624 - -0.3
1,628 + +1.7
1,629 - -0.1
1,629 - -0.0

Or see this region's nucleotide sequence