Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3317

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3316 and EX28DRAFT_3317 overlap by 85 nucleotidesEX28DRAFT_3317 and EX28DRAFT_3318 are separated by 387 nucleotides EX28DRAFT_3316: EX28DRAFT_3316 - diguanylate cyclase (GGDEF) domain, at 615,117 to 617,198 _3316 EX28DRAFT_3317: EX28DRAFT_3317 - transcriptional regulator, TetR family, at 617,114 to 617,833 _3317 EX28DRAFT_3318: EX28DRAFT_3318 - RND family efflux transporter, MFP subunit, at 618,221 to 619,360 _3318 Position (kb) 617 618Strain fitness (log2 ratio) -2 -1 0 1 2 3at 616.130 kb on + strand, within EX28DRAFT_3316at 616.253 kb on - strand, within EX28DRAFT_3316at 616.320 kb on - strand, within EX28DRAFT_3316at 616.338 kb on + strand, within EX28DRAFT_3316at 616.352 kb on + strand, within EX28DRAFT_3316at 616.471 kb on - strand, within EX28DRAFT_3316at 616.542 kb on - strand, within EX28DRAFT_3316at 616.831 kb on + strand, within EX28DRAFT_3316at 616.911 kb on + strand, within EX28DRAFT_3316at 616.994 kb on + strandat 616.995 kb on - strandat 617.126 kb on + strandat 617.149 kb on + strandat 617.149 kb on + strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.180 kb on - strandat 617.196 kb on + strandat 617.196 kb on + strandat 617.197 kb on - strandat 617.243 kb on + strand, within EX28DRAFT_3317at 617.243 kb on + strand, within EX28DRAFT_3317at 617.282 kb on - strand, within EX28DRAFT_3317at 617.315 kb on + strand, within EX28DRAFT_3317at 617.316 kb on - strand, within EX28DRAFT_3317at 617.415 kb on - strand, within EX28DRAFT_3317at 617.467 kb on + strand, within EX28DRAFT_3317at 617.488 kb on + strand, within EX28DRAFT_3317at 617.537 kb on - strand, within EX28DRAFT_3317at 617.538 kb on + strand, within EX28DRAFT_3317at 617.538 kb on + strand, within EX28DRAFT_3317at 617.539 kb on - strand, within EX28DRAFT_3317at 617.711 kb on - strand, within EX28DRAFT_3317at 617.890 kb on - strandat 618.038 kb on + strandat 618.156 kb on + strandat 618.344 kb on - strand, within EX28DRAFT_3318at 618.474 kb on + strand, within EX28DRAFT_3318at 618.475 kb on - strand, within EX28DRAFT_3318at 618.495 kb on - strand, within EX28DRAFT_3318at 618.515 kb on + strand, within EX28DRAFT_3318at 618.516 kb on - strand, within EX28DRAFT_3318at 618.527 kb on + strand, within EX28DRAFT_3318at 618.624 kb on - strand, within EX28DRAFT_3318at 618.624 kb on - strand, within EX28DRAFT_3318at 618.641 kb on + strand, within EX28DRAFT_3318at 618.641 kb on + strand, within EX28DRAFT_3318at 618.718 kb on + strand, within EX28DRAFT_3318at 618.719 kb on - strand, within EX28DRAFT_3318at 618.719 kb on - strand, within EX28DRAFT_3318at 618.719 kb on - strand, within EX28DRAFT_3318

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
616,130 + EX28DRAFT_3316 0.49 -1.9
616,253 - EX28DRAFT_3316 0.55 -1.6
616,320 - EX28DRAFT_3316 0.58 +0.8
616,338 + EX28DRAFT_3316 0.59 -1.0
616,352 + EX28DRAFT_3316 0.59 +0.1
616,471 - EX28DRAFT_3316 0.65 -1.6
616,542 - EX28DRAFT_3316 0.68 +1.4
616,831 + EX28DRAFT_3316 0.82 +0.1
616,911 + EX28DRAFT_3316 0.86 +1.4
616,994 + -1.4
616,995 - +2.7
617,126 + -1.2
617,149 + +0.2
617,149 + +0.7
617,150 - +0.5
617,150 - +0.5
617,150 - +0.1
617,150 - -0.8
617,150 - -1.1
617,180 - -1.1
617,196 + +0.7
617,196 + -0.2
617,197 - +3.1
617,243 + EX28DRAFT_3317 0.18 +0.4
617,243 + EX28DRAFT_3317 0.18 +1.7
617,282 - EX28DRAFT_3317 0.23 -0.8
617,315 + EX28DRAFT_3317 0.28 +0.3
617,316 - EX28DRAFT_3317 0.28 -0.9
617,415 - EX28DRAFT_3317 0.42 -0.6
617,467 + EX28DRAFT_3317 0.49 +1.1
617,488 + EX28DRAFT_3317 0.52 +0.7
617,537 - EX28DRAFT_3317 0.59 -0.5
617,538 + EX28DRAFT_3317 0.59 +1.1
617,538 + EX28DRAFT_3317 0.59 +0.2
617,539 - EX28DRAFT_3317 0.59 +2.0
617,711 - EX28DRAFT_3317 0.83 +0.3
617,890 - +0.7
618,038 + -0.5
618,156 + -0.5
618,344 - EX28DRAFT_3318 0.11 -0.6
618,474 + EX28DRAFT_3318 0.22 +0.5
618,475 - EX28DRAFT_3318 0.22 +0.5
618,495 - EX28DRAFT_3318 0.24 +0.9
618,515 + EX28DRAFT_3318 0.26 +1.8
618,516 - EX28DRAFT_3318 0.26 +2.9
618,527 + EX28DRAFT_3318 0.27 -0.1
618,624 - EX28DRAFT_3318 0.35 -0.5
618,624 - EX28DRAFT_3318 0.35 +0.5
618,641 + EX28DRAFT_3318 0.37 +0.9
618,641 + EX28DRAFT_3318 0.37 +1.3
618,718 + EX28DRAFT_3318 0.44 -0.3
618,719 - EX28DRAFT_3318 0.44 -0.5
618,719 - EX28DRAFT_3318 0.44 -0.2
618,719 - EX28DRAFT_3318 0.44 -1.3

Or see this region's nucleotide sequence