Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3271 and EX28DRAFT_3272 are separated by 92 nucleotides EX28DRAFT_3272 and EX28DRAFT_3273 are separated by 138 nucleotides
EX28DRAFT_3271: EX28DRAFT_3271 - Zn-dependent alcohol dehydrogenases, at 563,798 to 564,817
_3271
EX28DRAFT_3272: EX28DRAFT_3272 - Dihydroxyacetone kinase, at 564,910 to 566,556
_3272
EX28DRAFT_3273: EX28DRAFT_3273 - Predicted ATPase, at 566,695 to 568,197
_3273
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -1
0
1
2
3 at 564.103 kb on + strand, within EX28DRAFT_3271 at 564.103 kb on + strand, within EX28DRAFT_3271 at 564.104 kb on - strand, within EX28DRAFT_3271 at 564.540 kb on - strand, within EX28DRAFT_3271 at 564.892 kb on + strand at 564.925 kb on + strand at 564.925 kb on + strand at 564.937 kb on - strand at 564.994 kb on - strand at 565.161 kb on - strand, within EX28DRAFT_3272 at 565.321 kb on + strand, within EX28DRAFT_3272 at 565.389 kb on + strand, within EX28DRAFT_3272 at 565.390 kb on - strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.479 kb on - strand, within EX28DRAFT_3272 at 565.479 kb on - strand, within EX28DRAFT_3272 at 565.512 kb on - strand, within EX28DRAFT_3272 at 565.900 kb on + strand, within EX28DRAFT_3272 at 565.901 kb on - strand, within EX28DRAFT_3272 at 565.901 kb on - strand, within EX28DRAFT_3272 at 565.933 kb on - strand, within EX28DRAFT_3272 at 565.935 kb on + strand, within EX28DRAFT_3272 at 566.079 kb on + strand, within EX28DRAFT_3272 at 566.104 kb on - strand, within EX28DRAFT_3272 at 566.461 kb on + strand at 566.595 kb on - strand at 566.632 kb on + strand at 566.633 kb on - strand at 566.660 kb on + strand at 566.661 kb on - strand at 566.662 kb on + strand at 566.700 kb on + strand at 566.701 kb on - strand at 566.701 kb on - strand at 566.711 kb on + strand at 566.991 kb on + strand, within EX28DRAFT_3273 at 567.103 kb on - strand, within EX28DRAFT_3273 at 567.103 kb on - strand, within EX28DRAFT_3273 at 567.103 kb on - strand, within EX28DRAFT_3273 at 567.172 kb on + strand, within EX28DRAFT_3273 at 567.172 kb on + strand, within EX28DRAFT_3273 at 567.176 kb on + strand, within EX28DRAFT_3273 at 567.254 kb on + strand, within EX28DRAFT_3273 at 567.380 kb on - strand, within EX28DRAFT_3273 at 567.434 kb on - strand, within EX28DRAFT_3273 at 567.527 kb on + strand, within EX28DRAFT_3273
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 564,103 + EX28DRAFT_3271 0.30 -0.4 564,103 + EX28DRAFT_3271 0.30 -1.0 564,104 - EX28DRAFT_3271 0.30 +0.0 564,540 - EX28DRAFT_3271 0.73 -1.0 564,892 + +1.2 564,925 + +2.4 564,925 + +2.7 564,937 - +0.7 564,994 - +0.5 565,161 - EX28DRAFT_3272 0.15 +0.4 565,321 + EX28DRAFT_3272 0.25 -0.1 565,389 + EX28DRAFT_3272 0.29 +1.1 565,390 - EX28DRAFT_3272 0.29 +3.0 565,478 + EX28DRAFT_3272 0.34 +0.5 565,478 + EX28DRAFT_3272 0.34 +0.9 565,478 + EX28DRAFT_3272 0.34 +2.8 565,478 + EX28DRAFT_3272 0.34 +1.1 565,478 + EX28DRAFT_3272 0.34 -0.6 565,479 - EX28DRAFT_3272 0.35 -1.0 565,479 - EX28DRAFT_3272 0.35 +0.3 565,512 - EX28DRAFT_3272 0.37 +0.8 565,900 + EX28DRAFT_3272 0.60 -0.7 565,901 - EX28DRAFT_3272 0.60 +0.3 565,901 - EX28DRAFT_3272 0.60 -1.6 565,933 - EX28DRAFT_3272 0.62 -0.6 565,935 + EX28DRAFT_3272 0.62 -1.5 566,079 + EX28DRAFT_3272 0.71 -1.7 566,104 - EX28DRAFT_3272 0.72 -0.5 566,461 + +0.5 566,595 - +1.0 566,632 + -0.0 566,633 - -1.0 566,660 + +1.2 566,661 - +2.7 566,662 + -0.5 566,700 + -0.4 566,701 - -0.2 566,701 - -1.3 566,711 + +0.5 566,991 + EX28DRAFT_3273 0.20 -0.4 567,103 - EX28DRAFT_3273 0.27 +0.7 567,103 - EX28DRAFT_3273 0.27 +0.3 567,103 - EX28DRAFT_3273 0.27 -0.9 567,172 + EX28DRAFT_3273 0.32 +0.1 567,172 + EX28DRAFT_3273 0.32 -1.6 567,176 + EX28DRAFT_3273 0.32 +0.6 567,254 + EX28DRAFT_3273 0.37 +1.2 567,380 - EX28DRAFT_3273 0.46 -0.6 567,434 - EX28DRAFT_3273 0.49 -0.0 567,527 + EX28DRAFT_3273 0.55 -1.0
Or see this region's nucleotide sequence