Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3117 and EX28DRAFT_3118 overlap by 8 nucleotides EX28DRAFT_3118 and EX28DRAFT_3119 are separated by 5 nucleotides EX28DRAFT_3119 and EX28DRAFT_3120 overlap by 4 nucleotides EX28DRAFT_3120 and EX28DRAFT_3121 are separated by 130 nucleotides
EX28DRAFT_3117: EX28DRAFT_3117 - phage tail protein, P2 protein I family, at 424,313 to 424,921
_3117
EX28DRAFT_3118: EX28DRAFT_3118 - Phage-related baseplate assembly protein, at 424,914 to 425,822
_3118
EX28DRAFT_3119: EX28DRAFT_3119 - Phage baseplate assembly protein W, at 425,828 to 426,178
_3119
EX28DRAFT_3120: EX28DRAFT_3120 - phage baseplate assembly protein V, at 426,175 to 426,798
_3120
EX28DRAFT_3121: EX28DRAFT_3121 - P2 phage tail completion protein R (GpR), at 426,929 to 427,396
_3121
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 424.980 kb on + strand at 424.981 kb on - strand at 424.981 kb on - strand at 424.981 kb on - strand at 425.044 kb on + strand, within EX28DRAFT_3118 at 425.044 kb on + strand, within EX28DRAFT_3118 at 425.045 kb on - strand, within EX28DRAFT_3118 at 425.093 kb on + strand, within EX28DRAFT_3118 at 425.095 kb on + strand, within EX28DRAFT_3118 at 425.096 kb on - strand, within EX28DRAFT_3118 at 425.096 kb on - strand, within EX28DRAFT_3118 at 425.158 kb on + strand, within EX28DRAFT_3118 at 425.158 kb on + strand, within EX28DRAFT_3118 at 425.159 kb on - strand, within EX28DRAFT_3118 at 425.159 kb on - strand, within EX28DRAFT_3118 at 425.159 kb on - strand, within EX28DRAFT_3118 at 425.185 kb on - strand, within EX28DRAFT_3118 at 425.243 kb on + strand, within EX28DRAFT_3118 at 425.243 kb on + strand, within EX28DRAFT_3118 at 425.244 kb on - strand, within EX28DRAFT_3118 at 425.392 kb on + strand, within EX28DRAFT_3118 at 425.495 kb on + strand, within EX28DRAFT_3118 at 425.496 kb on - strand, within EX28DRAFT_3118 at 425.535 kb on - strand, within EX28DRAFT_3118 at 425.817 kb on - strand at 425.848 kb on + strand at 425.848 kb on + strand at 425.895 kb on + strand, within EX28DRAFT_3119 at 425.895 kb on + strand, within EX28DRAFT_3119 at 425.896 kb on - strand, within EX28DRAFT_3119 at 425.896 kb on - strand, within EX28DRAFT_3119 at 425.896 kb on - strand, within EX28DRAFT_3119 at 425.896 kb on - strand, within EX28DRAFT_3119 at 425.896 kb on - strand, within EX28DRAFT_3119 at 426.189 kb on + strand at 426.324 kb on + strand, within EX28DRAFT_3120 at 426.324 kb on + strand, within EX28DRAFT_3120 at 426.324 kb on + strand, within EX28DRAFT_3120 at 426.325 kb on - strand, within EX28DRAFT_3120 at 426.328 kb on + strand, within EX28DRAFT_3120 at 426.329 kb on - strand, within EX28DRAFT_3120 at 426.357 kb on + strand, within EX28DRAFT_3120 at 426.444 kb on + strand, within EX28DRAFT_3120 at 426.810 kb on + strand at 426.810 kb on + strand at 426.811 kb on - strand at 426.877 kb on + strand at 426.878 kb on - strand at 426.967 kb on - strand at 427.017 kb on + strand, within EX28DRAFT_3121 at 427.018 kb on - strand, within EX28DRAFT_3121 at 427.157 kb on - strand, within EX28DRAFT_3121
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 424,980 + +0.2 424,981 - +1.1 424,981 - +3.3 424,981 - -0.2 425,044 + EX28DRAFT_3118 0.14 +0.3 425,044 + EX28DRAFT_3118 0.14 +0.1 425,045 - EX28DRAFT_3118 0.14 +0.9 425,093 + EX28DRAFT_3118 0.20 -1.6 425,095 + EX28DRAFT_3118 0.20 -0.3 425,096 - EX28DRAFT_3118 0.20 +0.3 425,096 - EX28DRAFT_3118 0.20 -0.5 425,158 + EX28DRAFT_3118 0.27 -1.2 425,158 + EX28DRAFT_3118 0.27 +0.3 425,159 - EX28DRAFT_3118 0.27 -1.0 425,159 - EX28DRAFT_3118 0.27 +0.2 425,159 - EX28DRAFT_3118 0.27 -0.8 425,185 - EX28DRAFT_3118 0.30 -0.4 425,243 + EX28DRAFT_3118 0.36 -0.0 425,243 + EX28DRAFT_3118 0.36 +0.8 425,244 - EX28DRAFT_3118 0.36 -0.4 425,392 + EX28DRAFT_3118 0.53 +1.3 425,495 + EX28DRAFT_3118 0.64 +1.0 425,496 - EX28DRAFT_3118 0.64 -0.6 425,535 - EX28DRAFT_3118 0.68 -0.9 425,817 - +1.0 425,848 + +0.7 425,848 + -0.1 425,895 + EX28DRAFT_3119 0.19 -1.9 425,895 + EX28DRAFT_3119 0.19 -0.4 425,896 - EX28DRAFT_3119 0.19 -3.1 425,896 - EX28DRAFT_3119 0.19 -0.5 425,896 - EX28DRAFT_3119 0.19 +1.0 425,896 - EX28DRAFT_3119 0.19 +1.5 425,896 - EX28DRAFT_3119 0.19 -1.0 426,189 + +0.9 426,324 + EX28DRAFT_3120 0.24 -0.0 426,324 + EX28DRAFT_3120 0.24 +2.7 426,324 + EX28DRAFT_3120 0.24 +0.5 426,325 - EX28DRAFT_3120 0.24 +0.4 426,328 + EX28DRAFT_3120 0.25 +0.7 426,329 - EX28DRAFT_3120 0.25 +1.9 426,357 + EX28DRAFT_3120 0.29 +0.2 426,444 + EX28DRAFT_3120 0.43 +0.7 426,810 + -2.3 426,810 + -0.6 426,811 - -0.1 426,877 + -0.7 426,878 - -0.8 426,967 - +0.4 427,017 + EX28DRAFT_3121 0.19 +0.1 427,018 - EX28DRAFT_3121 0.19 -0.4 427,157 - EX28DRAFT_3121 0.49 -0.9
Or see this region's nucleotide sequence