Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3038 and EX28DRAFT_3039 are separated by 231 nucleotides EX28DRAFT_3039 and EX28DRAFT_3040 are separated by 93 nucleotides EX28DRAFT_3040 and EX28DRAFT_3041 are separated by 81 nucleotides
EX28DRAFT_3038: EX28DRAFT_3038 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 346,657 to 348,204
_3038
EX28DRAFT_3039: EX28DRAFT_3039 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 348,436 to 349,476
_3039
EX28DRAFT_3040: EX28DRAFT_3040 - TIGR00645 family protein, at 349,570 to 350,058
_3040
EX28DRAFT_3041: EX28DRAFT_3041 - hypothetical protein, at 350,140 to 350,643
_3041
Position (kb) 348
349
350 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 347.442 kb on + strand, within EX28DRAFT_3038 at 348.058 kb on - strand at 348.116 kb on + strand at 348.117 kb on - strand at 348.140 kb on - strand at 348.140 kb on - strand at 348.140 kb on - strand at 348.198 kb on + strand at 348.198 kb on + strand at 348.199 kb on - strand at 348.199 kb on - strand at 348.199 kb on - strand at 348.204 kb on + strand at 348.204 kb on + strand at 348.205 kb on - strand at 348.246 kb on + strand at 348.249 kb on + strand at 348.249 kb on + strand at 348.280 kb on + strand at 348.281 kb on - strand at 348.302 kb on + strand at 348.307 kb on - strand at 348.345 kb on + strand at 348.357 kb on + strand at 348.365 kb on + strand at 348.365 kb on + strand at 348.365 kb on + strand at 348.366 kb on - strand at 348.380 kb on + strand at 348.471 kb on + strand at 348.472 kb on - strand at 348.479 kb on - strand at 348.479 kb on - strand at 348.538 kb on - strand at 348.627 kb on + strand, within EX28DRAFT_3039 at 348.632 kb on - strand, within EX28DRAFT_3039 at 348.714 kb on + strand, within EX28DRAFT_3039 at 348.774 kb on + strand, within EX28DRAFT_3039 at 348.779 kb on - strand, within EX28DRAFT_3039 at 348.826 kb on + strand, within EX28DRAFT_3039 at 348.827 kb on - strand, within EX28DRAFT_3039 at 348.834 kb on + strand, within EX28DRAFT_3039 at 348.925 kb on + strand, within EX28DRAFT_3039 at 348.925 kb on + strand, within EX28DRAFT_3039 at 348.925 kb on + strand, within EX28DRAFT_3039 at 349.022 kb on - strand, within EX28DRAFT_3039 at 349.022 kb on - strand, within EX28DRAFT_3039 at 349.135 kb on + strand, within EX28DRAFT_3039 at 349.183 kb on - strand, within EX28DRAFT_3039 at 349.474 kb on + strand at 349.474 kb on + strand at 349.525 kb on + strand at 349.529 kb on + strand at 349.529 kb on + strand at 349.529 kb on + strand at 349.530 kb on - strand at 349.578 kb on + strand at 349.579 kb on - strand at 349.587 kb on + strand at 349.588 kb on - strand at 349.683 kb on + strand, within EX28DRAFT_3040 at 349.776 kb on + strand, within EX28DRAFT_3040 at 350.000 kb on + strand, within EX28DRAFT_3040 at 350.030 kb on + strand at 350.030 kb on + strand at 350.031 kb on - strand at 350.031 kb on - strand at 350.059 kb on - strand at 350.092 kb on + strand at 350.092 kb on + strand at 350.093 kb on - strand at 350.094 kb on + strand at 350.095 kb on - strand at 350.095 kb on - strand at 350.095 kb on - strand at 350.132 kb on + strand at 350.132 kb on + strand at 350.174 kb on + strand at 350.174 kb on + strand at 350.406 kb on + strand, within EX28DRAFT_3041 at 350.431 kb on - strand, within EX28DRAFT_3041
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 347,442 + EX28DRAFT_3038 0.51 +1.3 348,058 - -0.4 348,116 + +0.8 348,117 - -0.8 348,140 - -2.3 348,140 - -0.8 348,140 - +0.1 348,198 + +0.3 348,198 + -0.2 348,199 - +0.6 348,199 - +0.3 348,199 - -0.4 348,204 + -0.0 348,204 + -1.4 348,205 - +0.1 348,246 + -1.7 348,249 + +0.6 348,249 + +0.8 348,280 + +0.5 348,281 - -0.5 348,302 + +4.1 348,307 - +0.5 348,345 + +0.2 348,357 + -0.6 348,365 + -1.7 348,365 + -0.1 348,365 + -1.1 348,366 - -1.7 348,380 + +0.3 348,471 + +4.1 348,472 - -1.0 348,479 - -2.0 348,479 - +0.3 348,538 - -0.3 348,627 + EX28DRAFT_3039 0.18 -1.2 348,632 - EX28DRAFT_3039 0.19 +0.5 348,714 + EX28DRAFT_3039 0.27 +0.6 348,774 + EX28DRAFT_3039 0.32 +1.3 348,779 - EX28DRAFT_3039 0.33 -1.1 348,826 + EX28DRAFT_3039 0.37 -1.3 348,827 - EX28DRAFT_3039 0.38 -0.6 348,834 + EX28DRAFT_3039 0.38 -0.7 348,925 + EX28DRAFT_3039 0.47 +0.5 348,925 + EX28DRAFT_3039 0.47 +0.5 348,925 + EX28DRAFT_3039 0.47 +0.2 349,022 - EX28DRAFT_3039 0.56 +0.9 349,022 - EX28DRAFT_3039 0.56 +0.4 349,135 + EX28DRAFT_3039 0.67 +2.2 349,183 - EX28DRAFT_3039 0.72 -1.7 349,474 + -0.5 349,474 + +0.3 349,525 + +0.8 349,529 + -0.0 349,529 + -0.1 349,529 + -1.2 349,530 - +0.1 349,578 + -1.3 349,579 - +0.1 349,587 + -0.4 349,588 - +0.7 349,683 + EX28DRAFT_3040 0.23 -0.4 349,776 + EX28DRAFT_3040 0.42 -0.4 350,000 + EX28DRAFT_3040 0.88 -0.5 350,030 + -0.0 350,030 + -0.5 350,031 - -0.4 350,031 - +0.4 350,059 - -0.2 350,092 + -0.7 350,092 + +1.0 350,093 - +9.1 350,094 + -0.7 350,095 - +2.5 350,095 - +0.1 350,095 - +0.7 350,132 + +1.0 350,132 + +0.5 350,174 + +3.0 350,174 + +0.9 350,406 + EX28DRAFT_3041 0.53 -1.2 350,431 - EX28DRAFT_3041 0.58 -0.3
Or see this region's nucleotide sequence