Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2867

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2866 and EX28DRAFT_2867 are separated by 95 nucleotidesEX28DRAFT_2867 and EX28DRAFT_2868 are separated by 77 nucleotides EX28DRAFT_2866: EX28DRAFT_2866 - Uncharacterized domain of BarA-like signal transduction histidine kinases, at 170,474 to 173,233 _2866 EX28DRAFT_2867: EX28DRAFT_2867 - glycerate kinase, at 173,329 to 174,468 _2867 EX28DRAFT_2868: EX28DRAFT_2868 - glucarate dehydratase, at 174,546 to 175,883 _2868 Position (kb) 173 174 175Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 172.330 kb on + strand, within EX28DRAFT_2866at 172.419 kb on - strand, within EX28DRAFT_2866at 172.419 kb on - strand, within EX28DRAFT_2866at 172.498 kb on + strand, within EX28DRAFT_2866at 172.629 kb on + strand, within EX28DRAFT_2866at 172.629 kb on + strand, within EX28DRAFT_2866at 172.629 kb on + strand, within EX28DRAFT_2866at 172.629 kb on + strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.772 kb on + strand, within EX28DRAFT_2866at 172.819 kb on - strand, within EX28DRAFT_2866at 172.851 kb on - strand, within EX28DRAFT_2866at 172.851 kb on - strand, within EX28DRAFT_2866at 172.999 kb on + strandat 173.220 kb on + strandat 173.236 kb on + strandat 173.237 kb on - strandat 173.237 kb on - strandat 173.269 kb on - strandat 173.330 kb on + strandat 173.331 kb on - strandat 173.331 kb on - strandat 173.331 kb on - strandat 173.432 kb on + strandat 173.641 kb on + strand, within EX28DRAFT_2867at 173.642 kb on - strand, within EX28DRAFT_2867at 173.784 kb on - strand, within EX28DRAFT_2867at 173.784 kb on - strand, within EX28DRAFT_2867at 173.849 kb on - strand, within EX28DRAFT_2867at 174.084 kb on + strand, within EX28DRAFT_2867at 174.084 kb on + strand, within EX28DRAFT_2867at 174.084 kb on + strand, within EX28DRAFT_2867at 174.085 kb on - strand, within EX28DRAFT_2867at 174.117 kb on + strand, within EX28DRAFT_2867at 174.118 kb on - strand, within EX28DRAFT_2867at 174.156 kb on + strand, within EX28DRAFT_2867at 174.401 kb on - strandat 174.440 kb on + strandat 174.441 kb on - strandat 174.441 kb on - strandat 174.480 kb on - strandat 174.485 kb on + strandat 174.486 kb on - strandat 174.486 kb on - strandat 174.486 kb on - strandat 174.503 kb on + strandat 174.513 kb on - strandat 174.547 kb on + strandat 174.552 kb on + strandat 174.598 kb on + strandat 174.750 kb on - strand, within EX28DRAFT_2868at 174.866 kb on + strand, within EX28DRAFT_2868at 174.866 kb on + strand, within EX28DRAFT_2868at 174.867 kb on - strand, within EX28DRAFT_2868at 175.284 kb on - strand, within EX28DRAFT_2868at 175.291 kb on + strand, within EX28DRAFT_2868at 175.439 kb on - strand, within EX28DRAFT_2868

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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172,330 + EX28DRAFT_2866 0.67 +5.6
172,419 - EX28DRAFT_2866 0.70 +2.5
172,419 - EX28DRAFT_2866 0.70 +1.5
172,498 + EX28DRAFT_2866 0.73 +1.1
172,629 + EX28DRAFT_2866 0.78 +2.3
172,629 + EX28DRAFT_2866 0.78 +0.0
172,629 + EX28DRAFT_2866 0.78 +2.3
172,629 + EX28DRAFT_2866 0.78 +2.3
172,630 - EX28DRAFT_2866 0.78 +1.7
172,630 - EX28DRAFT_2866 0.78 +0.9
172,630 - EX28DRAFT_2866 0.78 +2.4
172,630 - EX28DRAFT_2866 0.78 +0.3
172,630 - EX28DRAFT_2866 0.78 +1.8
172,772 + EX28DRAFT_2866 0.83 +3.0
172,819 - EX28DRAFT_2866 0.85 +1.3
172,851 - EX28DRAFT_2866 0.86 +1.8
172,851 - EX28DRAFT_2866 0.86 +2.4
172,999 + +2.3
173,220 + -1.1
173,236 + -0.6
173,237 - -0.4
173,237 - -0.4
173,269 - +0.7
173,330 + +0.2
173,331 - -0.6
173,331 - +0.2
173,331 - -0.8
173,432 + -4.4
173,641 + EX28DRAFT_2867 0.27 -3.2
173,642 - EX28DRAFT_2867 0.27 -4.5
173,784 - EX28DRAFT_2867 0.40 -2.6
173,784 - EX28DRAFT_2867 0.40 -3.2
173,849 - EX28DRAFT_2867 0.46 -1.8
174,084 + EX28DRAFT_2867 0.66 -1.7
174,084 + EX28DRAFT_2867 0.66 -2.9
174,084 + EX28DRAFT_2867 0.66 -2.4
174,085 - EX28DRAFT_2867 0.66 -2.7
174,117 + EX28DRAFT_2867 0.69 -2.0
174,118 - EX28DRAFT_2867 0.69 -6.0
174,156 + EX28DRAFT_2867 0.73 -1.4
174,401 - -5.6
174,440 + -3.4
174,441 - -4.4
174,441 - -2.0
174,480 - -0.8
174,485 + -0.4
174,486 - +2.6
174,486 - -2.3
174,486 - -1.8
174,503 + -0.6
174,513 - +0.6
174,547 + -3.2
174,552 + -2.5
174,598 + +0.7
174,750 - EX28DRAFT_2868 0.15 +2.7
174,866 + EX28DRAFT_2868 0.24 -0.4
174,866 + EX28DRAFT_2868 0.24 +0.2
174,867 - EX28DRAFT_2868 0.24 +2.6
175,284 - EX28DRAFT_2868 0.55 -0.2
175,291 + EX28DRAFT_2868 0.56 -1.7
175,439 - EX28DRAFT_2868 0.67 +0.1

Or see this region's nucleotide sequence