Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2856

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2854 and EX28DRAFT_2855 are separated by 85 nucleotidesEX28DRAFT_2855 and EX28DRAFT_2856 are separated by 54 nucleotidesEX28DRAFT_2856 and EX28DRAFT_2857 overlap by 1 nucleotides EX28DRAFT_2854: EX28DRAFT_2854 - queuosine biosynthesis protein QueD, at 156,782 to 157,144 _2854 EX28DRAFT_2855: EX28DRAFT_2855 - putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, at 157,230 to 157,901 _2855 EX28DRAFT_2856: EX28DRAFT_2856 - Putative N-acetylmannosamine-6-phosphate epimerase, at 157,956 to 158,663 _2856 EX28DRAFT_2857: EX28DRAFT_2857 - PTS system, glucose-like IIB component, at 158,663 to 160,222 _2857 Position (kb) 157 158 159Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 156.974 kb on + strand, within EX28DRAFT_2854at 156.975 kb on - strand, within EX28DRAFT_2854at 156.975 kb on - strand, within EX28DRAFT_2854at 157.127 kb on - strandat 157.127 kb on - strandat 157.130 kb on + strandat 157.239 kb on - strandat 157.338 kb on + strand, within EX28DRAFT_2855at 157.427 kb on + strand, within EX28DRAFT_2855at 157.461 kb on + strand, within EX28DRAFT_2855at 157.462 kb on - strand, within EX28DRAFT_2855at 157.731 kb on + strand, within EX28DRAFT_2855at 157.737 kb on - strand, within EX28DRAFT_2855at 157.737 kb on - strand, within EX28DRAFT_2855at 157.737 kb on - strand, within EX28DRAFT_2855at 157.775 kb on + strand, within EX28DRAFT_2855at 157.775 kb on + strand, within EX28DRAFT_2855at 157.775 kb on + strand, within EX28DRAFT_2855at 157.776 kb on - strand, within EX28DRAFT_2855at 157.776 kb on - strand, within EX28DRAFT_2855at 157.818 kb on + strand, within EX28DRAFT_2855at 157.852 kb on + strandat 157.852 kb on + strandat 157.852 kb on + strandat 157.902 kb on - strandat 157.931 kb on - strandat 157.934 kb on - strandat 157.994 kb on + strandat 157.995 kb on - strandat 158.007 kb on - strandat 158.049 kb on - strand, within EX28DRAFT_2856at 158.195 kb on + strand, within EX28DRAFT_2856at 158.196 kb on - strand, within EX28DRAFT_2856at 158.196 kb on - strand, within EX28DRAFT_2856at 158.225 kb on + strand, within EX28DRAFT_2856at 158.226 kb on - strand, within EX28DRAFT_2856at 158.270 kb on + strand, within EX28DRAFT_2856at 158.450 kb on - strand, within EX28DRAFT_2856at 158.496 kb on - strand, within EX28DRAFT_2856at 158.576 kb on + strand, within EX28DRAFT_2856at 158.576 kb on + strand, within EX28DRAFT_2856at 158.576 kb on + strand, within EX28DRAFT_2856at 158.577 kb on - strand, within EX28DRAFT_2856at 158.664 kb on + strandat 158.715 kb on + strandat 158.715 kb on + strandat 158.716 kb on - strandat 158.716 kb on - strandat 159.115 kb on + strand, within EX28DRAFT_2857at 159.116 kb on - strand, within EX28DRAFT_2857at 159.171 kb on + strand, within EX28DRAFT_2857at 159.171 kb on + strand, within EX28DRAFT_2857at 159.171 kb on + strand, within EX28DRAFT_2857at 159.172 kb on - strand, within EX28DRAFT_2857at 159.301 kb on - strand, within EX28DRAFT_2857at 159.301 kb on - strand, within EX28DRAFT_2857at 159.301 kb on - strand, within EX28DRAFT_2857at 159.341 kb on - strand, within EX28DRAFT_2857at 159.343 kb on + strand, within EX28DRAFT_2857at 159.379 kb on - strand, within EX28DRAFT_2857at 159.379 kb on - strand, within EX28DRAFT_2857at 159.496 kb on - strand, within EX28DRAFT_2857at 159.496 kb on - strand, within EX28DRAFT_2857at 159.496 kb on - strand, within EX28DRAFT_2857at 159.546 kb on + strand, within EX28DRAFT_2857

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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156,974 + EX28DRAFT_2854 0.53 +0.4
156,975 - EX28DRAFT_2854 0.53 -1.2
156,975 - EX28DRAFT_2854 0.53 -0.9
157,127 - -0.8
157,127 - -0.1
157,130 + -0.6
157,239 - -0.4
157,338 + EX28DRAFT_2855 0.16 -0.1
157,427 + EX28DRAFT_2855 0.29 +0.3
157,461 + EX28DRAFT_2855 0.34 +0.9
157,462 - EX28DRAFT_2855 0.35 -0.0
157,731 + EX28DRAFT_2855 0.75 +0.8
157,737 - EX28DRAFT_2855 0.75 +0.1
157,737 - EX28DRAFT_2855 0.75 +0.0
157,737 - EX28DRAFT_2855 0.75 +2.0
157,775 + EX28DRAFT_2855 0.81 +0.4
157,775 + EX28DRAFT_2855 0.81 -1.1
157,775 + EX28DRAFT_2855 0.81 -0.8
157,776 - EX28DRAFT_2855 0.81 -1.9
157,776 - EX28DRAFT_2855 0.81 -0.4
157,818 + EX28DRAFT_2855 0.88 -0.5
157,852 + +2.8
157,852 + +0.7
157,852 + +0.2
157,902 - -0.4
157,931 - +0.5
157,934 - -0.6
157,994 + -1.1
157,995 - -0.1
158,007 - -0.3
158,049 - EX28DRAFT_2856 0.13 +3.7
158,195 + EX28DRAFT_2856 0.34 -0.1
158,196 - EX28DRAFT_2856 0.34 +0.3
158,196 - EX28DRAFT_2856 0.34 +0.1
158,225 + EX28DRAFT_2856 0.38 -3.0
158,226 - EX28DRAFT_2856 0.38 +1.1
158,270 + EX28DRAFT_2856 0.44 +0.0
158,450 - EX28DRAFT_2856 0.70 +0.8
158,496 - EX28DRAFT_2856 0.76 +0.5
158,576 + EX28DRAFT_2856 0.88 -0.4
158,576 + EX28DRAFT_2856 0.88 -2.7
158,576 + EX28DRAFT_2856 0.88 +0.3
158,577 - EX28DRAFT_2856 0.88 +0.2
158,664 + +0.4
158,715 + -0.8
158,715 + +4.3
158,716 - +0.9
158,716 - +0.3
159,115 + EX28DRAFT_2857 0.29 -1.1
159,116 - EX28DRAFT_2857 0.29 -0.1
159,171 + EX28DRAFT_2857 0.33 +0.3
159,171 + EX28DRAFT_2857 0.33 +1.0
159,171 + EX28DRAFT_2857 0.33 +1.0
159,172 - EX28DRAFT_2857 0.33 +3.0
159,301 - EX28DRAFT_2857 0.41 +1.3
159,301 - EX28DRAFT_2857 0.41 -1.4
159,301 - EX28DRAFT_2857 0.41 -0.8
159,341 - EX28DRAFT_2857 0.43 +1.2
159,343 + EX28DRAFT_2857 0.44 -0.2
159,379 - EX28DRAFT_2857 0.46 -1.0
159,379 - EX28DRAFT_2857 0.46 -3.6
159,496 - EX28DRAFT_2857 0.53 +0.5
159,496 - EX28DRAFT_2857 0.53 -0.5
159,496 - EX28DRAFT_2857 0.53 +0.7
159,546 + EX28DRAFT_2857 0.57 -0.3

Or see this region's nucleotide sequence