Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2693

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2692 and EX28DRAFT_2693 are separated by 446 nucleotidesEX28DRAFT_2693 and EX28DRAFT_2694 are separated by 129 nucleotidesEX28DRAFT_2694 and EX28DRAFT_2695 overlap by 4 nucleotides EX28DRAFT_2692: EX28DRAFT_2692 - 16S, at 1 to 51 _2692 EX28DRAFT_2693: EX28DRAFT_2693 - ATP-dependent chaperone ClpB, at 498 to 3,071 _2693 EX28DRAFT_2694: EX28DRAFT_2694 - YfiH family protein, at 3,201 to 3,932 _2694 EX28DRAFT_2695: EX28DRAFT_2695 - pseudouridine synthase, RluA family, at 3,929 to 4,909 _2695 Position (kb) 0 1 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 0.351 kb on + strandat 0.351 kb on + strandat 0.393 kb on - strandat 0.395 kb on - strandat 0.500 kb on - strandat 0.621 kb on + strandat 0.637 kb on + strandat 0.638 kb on - strandat 0.725 kb on - strandat 0.753 kb on - strandat 0.753 kb on - strandat 0.803 kb on + strand, within EX28DRAFT_2693at 0.803 kb on + strand, within EX28DRAFT_2693at 0.831 kb on - strand, within EX28DRAFT_2693at 0.864 kb on - strand, within EX28DRAFT_2693at 0.938 kb on + strand, within EX28DRAFT_2693at 1.106 kb on - strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.114 kb on + strand, within EX28DRAFT_2693at 1.178 kb on + strand, within EX28DRAFT_2693at 1.183 kb on - strand, within EX28DRAFT_2693at 1.183 kb on - strand, within EX28DRAFT_2693at 1.208 kb on + strand, within EX28DRAFT_2693at 1.209 kb on - strand, within EX28DRAFT_2693at 1.209 kb on - strand, within EX28DRAFT_2693at 1.241 kb on + strand, within EX28DRAFT_2693at 1.322 kb on + strand, within EX28DRAFT_2693at 1.485 kb on - strand, within EX28DRAFT_2693at 1.487 kb on + strand, within EX28DRAFT_2693at 1.487 kb on + strand, within EX28DRAFT_2693at 1.488 kb on - strand, within EX28DRAFT_2693at 1.488 kb on - strand, within EX28DRAFT_2693at 1.528 kb on - strand, within EX28DRAFT_2693at 1.761 kb on - strand, within EX28DRAFT_2693at 1.865 kb on + strand, within EX28DRAFT_2693at 1.931 kb on + strand, within EX28DRAFT_2693at 1.933 kb on + strand, within EX28DRAFT_2693at 1.933 kb on + strand, within EX28DRAFT_2693at 1.934 kb on - strand, within EX28DRAFT_2693at 2.036 kb on + strand, within EX28DRAFT_2693at 2.036 kb on + strand, within EX28DRAFT_2693at 2.036 kb on + strand, within EX28DRAFT_2693at 2.108 kb on - strand, within EX28DRAFT_2693at 2.116 kb on + strand, within EX28DRAFT_2693at 2.210 kb on + strand, within EX28DRAFT_2693at 2.321 kb on - strand, within EX28DRAFT_2693at 2.406 kb on - strand, within EX28DRAFT_2693at 2.494 kb on - strand, within EX28DRAFT_2693at 2.505 kb on - strand, within EX28DRAFT_2693at 2.580 kb on - strand, within EX28DRAFT_2693at 2.757 kb on - strand, within EX28DRAFT_2693at 2.757 kb on - strand, within EX28DRAFT_2693at 2.907 kb on - strandat 2.923 kb on - strandat 2.925 kb on + strandat 2.926 kb on - strandat 2.970 kb on + strandat 2.970 kb on + strandat 2.988 kb on - strandat 3.051 kb on - strandat 3.051 kb on - strandat 3.053 kb on + strandat 3.071 kb on + strandat 3.072 kb on - strandat 3.154 kb on + strandat 3.204 kb on + strandat 3.204 kb on + strandat 3.353 kb on + strand, within EX28DRAFT_2694at 3.365 kb on - strand, within EX28DRAFT_2694at 3.488 kb on + strand, within EX28DRAFT_2694at 3.489 kb on - strand, within EX28DRAFT_2694at 3.489 kb on - strand, within EX28DRAFT_2694at 3.650 kb on + strand, within EX28DRAFT_2694at 3.654 kb on - strand, within EX28DRAFT_2694at 3.658 kb on + strand, within EX28DRAFT_2694at 3.678 kb on - strand, within EX28DRAFT_2694at 3.685 kb on + strand, within EX28DRAFT_2694at 3.685 kb on + strand, within EX28DRAFT_2694at 3.879 kb on - strandat 3.952 kb on + strandat 3.952 kb on + strandat 3.953 kb on - strandat 3.986 kb on - strandat 3.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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351 + +0.4
351 + +1.6
393 - +0.4
395 - -0.5
500 - -2.9
621 + +1.1
637 + +1.6
638 - +0.4
725 - +1.0
753 - -0.9
753 - +1.1
803 + EX28DRAFT_2693 0.12 +1.1
803 + EX28DRAFT_2693 0.12 +0.2
831 - EX28DRAFT_2693 0.13 -0.6
864 - EX28DRAFT_2693 0.14 -0.7
938 + EX28DRAFT_2693 0.17 -1.9
1,106 - EX28DRAFT_2693 0.24 +1.1
1,110 + EX28DRAFT_2693 0.24 +0.0
1,110 + EX28DRAFT_2693 0.24 -1.4
1,110 + EX28DRAFT_2693 0.24 -0.5
1,110 + EX28DRAFT_2693 0.24 +0.6
1,110 + EX28DRAFT_2693 0.24 +5.0
1,110 + EX28DRAFT_2693 0.24 +2.6
1,110 + EX28DRAFT_2693 0.24 +0.3
1,110 + EX28DRAFT_2693 0.24 -2.0
1,110 + EX28DRAFT_2693 0.24 +1.3
1,110 + EX28DRAFT_2693 0.24 -1.4
1,111 - EX28DRAFT_2693 0.24 +1.1
1,111 - EX28DRAFT_2693 0.24 +0.7
1,111 - EX28DRAFT_2693 0.24 -1.3
1,111 - EX28DRAFT_2693 0.24 +0.5
1,111 - EX28DRAFT_2693 0.24 -2.8
1,111 - EX28DRAFT_2693 0.24 -0.4
1,111 - EX28DRAFT_2693 0.24 -0.0
1,111 - EX28DRAFT_2693 0.24 -2.6
1,111 - EX28DRAFT_2693 0.24 +9.0
1,114 + EX28DRAFT_2693 0.24 +1.7
1,178 + EX28DRAFT_2693 0.26 -0.2
1,183 - EX28DRAFT_2693 0.27 -0.6
1,183 - EX28DRAFT_2693 0.27 +0.7
1,208 + EX28DRAFT_2693 0.28 +0.2
1,209 - EX28DRAFT_2693 0.28 -1.6
1,209 - EX28DRAFT_2693 0.28 +0.3
1,241 + EX28DRAFT_2693 0.29 -0.4
1,322 + EX28DRAFT_2693 0.32 -1.2
1,485 - EX28DRAFT_2693 0.38 -0.8
1,487 + EX28DRAFT_2693 0.38 -1.1
1,487 + EX28DRAFT_2693 0.38 -1.6
1,488 - EX28DRAFT_2693 0.38 -0.5
1,488 - EX28DRAFT_2693 0.38 -0.1
1,528 - EX28DRAFT_2693 0.40 +0.4
1,761 - EX28DRAFT_2693 0.49 -0.1
1,865 + EX28DRAFT_2693 0.53 -2.9
1,931 + EX28DRAFT_2693 0.56 +1.3
1,933 + EX28DRAFT_2693 0.56 -0.2
1,933 + EX28DRAFT_2693 0.56 +0.4
1,934 - EX28DRAFT_2693 0.56 +0.8
2,036 + EX28DRAFT_2693 0.60 -1.6
2,036 + EX28DRAFT_2693 0.60 +2.9
2,036 + EX28DRAFT_2693 0.60 +0.5
2,108 - EX28DRAFT_2693 0.63 +1.4
2,116 + EX28DRAFT_2693 0.63 +2.6
2,210 + EX28DRAFT_2693 0.67 -0.7
2,321 - EX28DRAFT_2693 0.71 +0.0
2,406 - EX28DRAFT_2693 0.74 -0.8
2,494 - EX28DRAFT_2693 0.78 -0.2
2,505 - EX28DRAFT_2693 0.78 -0.5
2,580 - EX28DRAFT_2693 0.81 -0.4
2,757 - EX28DRAFT_2693 0.88 -0.2
2,757 - EX28DRAFT_2693 0.88 -1.7
2,907 - +0.4
2,923 - +1.3
2,925 + +0.9
2,926 - -2.3
2,970 + +2.2
2,970 + -1.3
2,988 - +0.6
3,051 - -1.2
3,051 - +1.9
3,053 + -1.5
3,071 + +0.4
3,072 - -0.1
3,154 + -0.3
3,204 + +1.4
3,204 + -3.4
3,353 + EX28DRAFT_2694 0.21 +2.3
3,365 - EX28DRAFT_2694 0.22 +2.2
3,488 + EX28DRAFT_2694 0.39 -0.4
3,489 - EX28DRAFT_2694 0.39 -0.2
3,489 - EX28DRAFT_2694 0.39 +1.7
3,650 + EX28DRAFT_2694 0.61 +1.7
3,654 - EX28DRAFT_2694 0.62 +0.5
3,658 + EX28DRAFT_2694 0.62 -1.7
3,678 - EX28DRAFT_2694 0.65 +0.6
3,685 + EX28DRAFT_2694 0.66 -0.2
3,685 + EX28DRAFT_2694 0.66 -0.9
3,879 - -0.0
3,952 + -0.7
3,952 + +1.1
3,953 - +1.6
3,986 - -0.4
3,998 - -1.5

Or see this region's nucleotide sequence