Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1911 and EX28DRAFT_1912 are separated by 87 nucleotides EX28DRAFT_1912 and EX28DRAFT_1913 overlap by 4 nucleotides EX28DRAFT_1913 and EX28DRAFT_1914 are separated by 245 nucleotides
EX28DRAFT_1911: EX28DRAFT_1911 - L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 1,920,175 to 1,924,137
_1911
EX28DRAFT_1912: EX28DRAFT_1912 - Uncharacterized protein conserved in bacteria, at 1,924,225 to 1,924,584
_1912
EX28DRAFT_1913: EX28DRAFT_1913 - transcriptional regulator, TetR family, at 1,924,581 to 1,925,219
_1913
EX28DRAFT_1914: EX28DRAFT_1914 - pyrimidine utilization protein A, at 1,925,465 to 1,926,556
_1914
Position (kb) 1924
1925
1926 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1923.947 kb on - strand at 1923.947 kb on - strand at 1924.066 kb on + strand at 1924.066 kb on + strand at 1924.130 kb on + strand at 1924.131 kb on - strand at 1924.146 kb on + strand at 1924.149 kb on + strand at 1924.171 kb on + strand at 1924.188 kb on + strand at 1924.188 kb on + strand at 1924.189 kb on - strand at 1924.189 kb on - strand at 1924.189 kb on - strand at 1924.224 kb on - strand at 1924.284 kb on + strand, within EX28DRAFT_1912 at 1924.284 kb on + strand, within EX28DRAFT_1912 at 1924.284 kb on + strand, within EX28DRAFT_1912 at 1924.556 kb on + strand at 1924.664 kb on + strand, within EX28DRAFT_1913 at 1924.665 kb on - strand, within EX28DRAFT_1913 at 1924.703 kb on - strand, within EX28DRAFT_1913 at 1924.931 kb on - strand, within EX28DRAFT_1913 at 1925.023 kb on + strand, within EX28DRAFT_1913 at 1925.023 kb on + strand, within EX28DRAFT_1913 at 1925.024 kb on - strand, within EX28DRAFT_1913 at 1925.045 kb on - strand, within EX28DRAFT_1913 at 1925.047 kb on + strand, within EX28DRAFT_1913 at 1925.189 kb on + strand at 1925.384 kb on - strand at 1925.446 kb on + strand at 1925.446 kb on + strand at 1925.447 kb on - strand at 1925.478 kb on + strand at 1925.479 kb on - strand at 1925.531 kb on + strand at 1925.532 kb on - strand at 1925.554 kb on + strand at 1925.714 kb on + strand, within EX28DRAFT_1914 at 1925.715 kb on - strand, within EX28DRAFT_1914 at 1925.837 kb on + strand, within EX28DRAFT_1914 at 1925.904 kb on - strand, within EX28DRAFT_1914 at 1925.904 kb on - strand, within EX28DRAFT_1914 at 1926.176 kb on + strand, within EX28DRAFT_1914 at 1926.176 kb on + strand, within EX28DRAFT_1914
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,923,947 - -0.3 1,923,947 - -0.1 1,924,066 + +0.6 1,924,066 + +1.5 1,924,130 + +0.6 1,924,131 - +0.1 1,924,146 + +0.7 1,924,149 + -0.1 1,924,171 + -0.4 1,924,188 + +0.2 1,924,188 + -0.6 1,924,189 - +1.0 1,924,189 - -3.2 1,924,189 - +0.2 1,924,224 - -2.1 1,924,284 + EX28DRAFT_1912 0.16 -0.5 1,924,284 + EX28DRAFT_1912 0.16 +2.4 1,924,284 + EX28DRAFT_1912 0.16 -0.3 1,924,556 + +0.1 1,924,664 + EX28DRAFT_1913 0.13 +0.4 1,924,665 - EX28DRAFT_1913 0.13 +0.7 1,924,703 - EX28DRAFT_1913 0.19 +1.0 1,924,931 - EX28DRAFT_1913 0.55 -3.8 1,925,023 + EX28DRAFT_1913 0.69 -0.3 1,925,023 + EX28DRAFT_1913 0.69 +1.5 1,925,024 - EX28DRAFT_1913 0.69 -0.2 1,925,045 - EX28DRAFT_1913 0.73 -1.3 1,925,047 + EX28DRAFT_1913 0.73 +2.1 1,925,189 + -1.5 1,925,384 - -0.8 1,925,446 + -1.2 1,925,446 + +0.8 1,925,447 - -0.4 1,925,478 + -0.2 1,925,479 - +5.0 1,925,531 + -2.8 1,925,532 - -0.8 1,925,554 + -1.7 1,925,714 + EX28DRAFT_1914 0.23 -0.0 1,925,715 - EX28DRAFT_1914 0.23 -1.1 1,925,837 + EX28DRAFT_1914 0.34 +0.7 1,925,904 - EX28DRAFT_1914 0.40 +1.6 1,925,904 - EX28DRAFT_1914 0.40 +3.2 1,926,176 + EX28DRAFT_1914 0.65 -0.2 1,926,176 + EX28DRAFT_1914 0.65 -2.1
Or see this region's nucleotide sequence