Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1648 and EX28DRAFT_1649 are separated by 100 nucleotides EX28DRAFT_1649 and EX28DRAFT_1650 are separated by 95 nucleotides EX28DRAFT_1650 and EX28DRAFT_1651 are separated by 44 nucleotides
EX28DRAFT_1648: EX28DRAFT_1648 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 1,664,809 to 1,665,906
_1648
EX28DRAFT_1649: EX28DRAFT_1649 - lactoylglutathione lyase, at 1,666,007 to 1,666,414
_1649
EX28DRAFT_1650: EX28DRAFT_1650 - ribonuclease T, at 1,666,510 to 1,667,160
_1650
EX28DRAFT_1651: EX28DRAFT_1651 - monothiol glutaredoxin, Grx4 family, at 1,667,205 to 1,667,552
_1651
Position (kb) 1666
1667 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 1665.195 kb on + strand, within EX28DRAFT_1648 at 1665.198 kb on - strand, within EX28DRAFT_1648 at 1665.399 kb on + strand, within EX28DRAFT_1648 at 1665.474 kb on - strand, within EX28DRAFT_1648 at 1665.574 kb on + strand, within EX28DRAFT_1648 at 1665.718 kb on + strand, within EX28DRAFT_1648 at 1665.719 kb on - strand, within EX28DRAFT_1648 at 1665.721 kb on - strand, within EX28DRAFT_1648 at 1665.759 kb on - strand, within EX28DRAFT_1648 at 1665.883 kb on + strand at 1665.893 kb on - strand at 1665.982 kb on + strand at 1665.983 kb on - strand at 1665.983 kb on - strand at 1666.006 kb on + strand at 1666.007 kb on - strand at 1666.069 kb on + strand, within EX28DRAFT_1649 at 1666.121 kb on + strand, within EX28DRAFT_1649 at 1666.122 kb on - strand, within EX28DRAFT_1649 at 1666.122 kb on - strand, within EX28DRAFT_1649 at 1666.181 kb on + strand, within EX28DRAFT_1649 at 1666.182 kb on - strand, within EX28DRAFT_1649 at 1666.182 kb on - strand, within EX28DRAFT_1649 at 1666.183 kb on + strand, within EX28DRAFT_1649 at 1666.184 kb on - strand, within EX28DRAFT_1649 at 1666.202 kb on + strand, within EX28DRAFT_1649 at 1666.202 kb on + strand, within EX28DRAFT_1649 at 1666.203 kb on - strand, within EX28DRAFT_1649 at 1666.315 kb on - strand, within EX28DRAFT_1649 at 1666.440 kb on + strand at 1666.498 kb on + strand at 1666.786 kb on + strand, within EX28DRAFT_1650 at 1667.004 kb on + strand, within EX28DRAFT_1650 at 1667.191 kb on - strand at 1667.206 kb on + strand at 1667.282 kb on - strand, within EX28DRAFT_1651 at 1667.360 kb on - strand, within EX28DRAFT_1651 at 1667.360 kb on - strand, within EX28DRAFT_1651 at 1667.400 kb on - strand, within EX28DRAFT_1651
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,665,195 + EX28DRAFT_1648 0.35 +1.1 1,665,198 - EX28DRAFT_1648 0.35 +0.5 1,665,399 + EX28DRAFT_1648 0.54 +1.2 1,665,474 - EX28DRAFT_1648 0.61 +0.1 1,665,574 + EX28DRAFT_1648 0.70 -0.2 1,665,718 + EX28DRAFT_1648 0.83 -2.3 1,665,719 - EX28DRAFT_1648 0.83 +0.3 1,665,721 - EX28DRAFT_1648 0.83 -0.8 1,665,759 - EX28DRAFT_1648 0.87 -0.2 1,665,883 + -1.3 1,665,893 - +0.6 1,665,982 + +0.7 1,665,983 - +0.3 1,665,983 - +0.5 1,666,006 + +4.7 1,666,007 - +0.1 1,666,069 + EX28DRAFT_1649 0.15 +8.1 1,666,121 + EX28DRAFT_1649 0.28 +0.1 1,666,122 - EX28DRAFT_1649 0.28 -2.3 1,666,122 - EX28DRAFT_1649 0.28 +0.4 1,666,181 + EX28DRAFT_1649 0.43 +1.4 1,666,182 - EX28DRAFT_1649 0.43 +0.6 1,666,182 - EX28DRAFT_1649 0.43 -0.3 1,666,183 + EX28DRAFT_1649 0.43 +0.0 1,666,184 - EX28DRAFT_1649 0.43 -0.4 1,666,202 + EX28DRAFT_1649 0.48 +0.2 1,666,202 + EX28DRAFT_1649 0.48 +2.0 1,666,203 - EX28DRAFT_1649 0.48 -0.2 1,666,315 - EX28DRAFT_1649 0.75 +0.5 1,666,440 + +2.3 1,666,498 + +2.2 1,666,786 + EX28DRAFT_1650 0.42 +2.1 1,667,004 + EX28DRAFT_1650 0.76 -1.3 1,667,191 - +0.3 1,667,206 + -2.5 1,667,282 - EX28DRAFT_1651 0.22 -2.5 1,667,360 - EX28DRAFT_1651 0.45 -0.6 1,667,360 - EX28DRAFT_1651 0.45 +1.3 1,667,400 - EX28DRAFT_1651 0.56 -0.7
Or see this region's nucleotide sequence