Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1445

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
1,456,243	+		EX28DRAFT_1444	0.41	+0.5
1,456,244	-		EX28DRAFT_1444	0.41	-0.6
1,456,279	+		EX28DRAFT_1444	0.43	-1.2
1,456,327	+		EX28DRAFT_1444	0.46	-2.2
1,456,328	-		EX28DRAFT_1444	0.46	-2.1
1,456,332	+		EX28DRAFT_1444	0.46	-2.7
1,456,332	+		EX28DRAFT_1444	0.46	+1.0
1,456,332	+		EX28DRAFT_1444	0.46	+0.6
1,456,333	-		EX28DRAFT_1444	0.47	-0.4
1,456,333	-		EX28DRAFT_1444	0.47	+1.1
1,456,429	+		EX28DRAFT_1444	0.52	-2.2
1,456,430	-		EX28DRAFT_1444	0.53	-0.9
1,456,430	-		EX28DRAFT_1444	0.53	-2.3
1,456,442	+		EX28DRAFT_1444	0.53	-2.3
1,456,443	-		EX28DRAFT_1444	0.53	+0.5
1,456,446	+		EX28DRAFT_1444	0.54	-1.8
1,456,446	+		EX28DRAFT_1444	0.54	-1.3
1,456,446	+		EX28DRAFT_1444	0.54	-0.2
1,456,447	-		EX28DRAFT_1444	0.54	-2.2
1,456,447	-		EX28DRAFT_1444	0.54	-1.0
1,456,467	+		EX28DRAFT_1444	0.55	+0.7
1,456,502	+		EX28DRAFT_1444	0.57	+0.2
1,456,502	+		EX28DRAFT_1444	0.57	+0.1
1,456,502	+		EX28DRAFT_1444	0.57	+0.5
1,456,503	-		EX28DRAFT_1444	0.57	-0.9
1,456,503	-		EX28DRAFT_1444	0.57	+0.9
1,456,503	-		EX28DRAFT_1444	0.57	-0.5
1,456,503	-		EX28DRAFT_1444	0.57	+0.6
1,456,597	+		EX28DRAFT_1444	0.63	+2.7
1,456,597	+		EX28DRAFT_1444	0.63	-0.4
1,456,598	-		EX28DRAFT_1444	0.63	+0.1
1,456,610	+		EX28DRAFT_1444	0.64	-0.9
1,456,610	+		EX28DRAFT_1444	0.64	-0.8
1,456,631	+		EX28DRAFT_1444	0.65	-0.5
1,456,688	+		EX28DRAFT_1444	0.69	+0.3
1,456,700	+		EX28DRAFT_1444	0.69	+3.5
1,456,701	-		EX28DRAFT_1444	0.69	-1.2
1,456,732	+		EX28DRAFT_1444	0.71	-1.2
1,456,738	+		EX28DRAFT_1444	0.72	-0.8
1,456,739	-		EX28DRAFT_1444	0.72	-1.3
1,456,753	-		EX28DRAFT_1444	0.73	+0.9
1,456,782	+		EX28DRAFT_1444	0.74	-0.0
1,456,842	-		EX28DRAFT_1444	0.78	-0.2
1,456,843	+		EX28DRAFT_1444	0.78	-0.4
1,456,878	-		EX28DRAFT_1444	0.80	-0.5
1,456,878	-		EX28DRAFT_1444	0.80	-0.1
1,456,949	-		EX28DRAFT_1444	0.85	-0.7
1,456,970	+		EX28DRAFT_1444	0.86	-0.8
1,456,970	+		EX28DRAFT_1444	0.86	-0.4
1,456,971	-		EX28DRAFT_1444	0.86	+0.7
1,456,971	-		EX28DRAFT_1444	0.86	+1.0
1,456,971	-		EX28DRAFT_1444	0.86	-1.4
1,456,972	+		EX28DRAFT_1444	0.86	+0.5
1,456,973	-		EX28DRAFT_1444	0.86	+0.0
1,456,977	+		EX28DRAFT_1444	0.86	+1.3
1,456,982	+		EX28DRAFT_1444	0.87	-0.7
1,457,059	+				+0.9
1,457,079	-				-0.4
1,457,081	+				+1.9
1,457,084	+				+0.1
1,457,090	+				+0.9
1,457,092	+				+0.0
1,457,092	+				-0.5
1,457,092	+				+1.5
1,457,093	-				-1.4
1,457,189	+				-1.5
1,457,200	-				+0.4
1,457,272	-				-0.7
1,457,423	+				-1.9
1,457,423	+				+4.0
1,457,589	+		EX28DRAFT_1445	0.16	-0.2
1,457,590	-		EX28DRAFT_1445	0.16	+0.4
1,457,661	+		EX28DRAFT_1445	0.19	-0.2
1,457,697	+		EX28DRAFT_1445	0.20	-1.7
1,457,698	-		EX28DRAFT_1445	0.20	-0.5
1,457,776	-		EX28DRAFT_1445	0.23	-0.9
1,457,776	-		EX28DRAFT_1445	0.23	+0.4
1,457,783	+		EX28DRAFT_1445	0.24	-0.1
1,457,832	+		EX28DRAFT_1445	0.25	-1.6
1,457,833	-		EX28DRAFT_1445	0.25	-1.4
1,457,833	-		EX28DRAFT_1445	0.25	-0.8
1,457,835	-		EX28DRAFT_1445	0.26	+2.9
1,457,846	+		EX28DRAFT_1445	0.26	+0.5
1,457,871	-		EX28DRAFT_1445	0.27	-2.1
1,457,915	-		EX28DRAFT_1445	0.29	-1.1
1,457,915	-		EX28DRAFT_1445	0.29	-1.3
1,457,995	-		EX28DRAFT_1445	0.32	-1.8
1,457,995	-		EX28DRAFT_1445	0.32	+0.4
1,458,072	-		EX28DRAFT_1445	0.35	-0.7
1,458,171	-		EX28DRAFT_1445	0.39	+3.6
1,458,183	+		EX28DRAFT_1445	0.39	+1.7
1,458,183	+		EX28DRAFT_1445	0.39	-0.7
1,458,183	+		EX28DRAFT_1445	0.39	+0.6
1,458,184	-		EX28DRAFT_1445	0.39	-0.6
1,458,185	+		EX28DRAFT_1445	0.39	+0.2
1,458,185	+		EX28DRAFT_1445	0.39	+1.9
1,458,185	+		EX28DRAFT_1445	0.39	-0.1
1,458,185	+		EX28DRAFT_1445	0.39	-0.3
1,458,186	-		EX28DRAFT_1445	0.39	+0.3
1,458,186	-		EX28DRAFT_1445	0.39	-0.8
1,458,198	+		EX28DRAFT_1445	0.40	-1.8
1,458,198	+		EX28DRAFT_1445	0.40	+0.1
1,458,199	-		EX28DRAFT_1445	0.40	+3.9
1,458,200	+		EX28DRAFT_1445	0.40	-0.5
1,458,275	-		EX28DRAFT_1445	0.43	-0.5
1,458,284	+		EX28DRAFT_1445	0.43	-1.5
1,458,284	+		EX28DRAFT_1445	0.43	-0.2
1,458,324	+		EX28DRAFT_1445	0.45	-0.7
1,458,324	+		EX28DRAFT_1445	0.45	+0.6
1,458,326	+		EX28DRAFT_1445	0.45	-1.4
1,458,541	-		EX28DRAFT_1445	0.53	+1.8
1,458,570	+		EX28DRAFT_1445	0.54	-0.9
1,458,618	+		EX28DRAFT_1445	0.56	-2.1
1,458,619	-		EX28DRAFT_1445	0.56	-1.4
1,458,619	-		EX28DRAFT_1445	0.56	+1.6
1,458,621	+		EX28DRAFT_1445	0.56	-0.7
1,458,621	+		EX28DRAFT_1445	0.56	-1.2
1,458,621	+		EX28DRAFT_1445	0.56	-0.9
1,458,621	+		EX28DRAFT_1445	0.56	+0.8
1,458,693	+		EX28DRAFT_1445	0.59	-0.4
1,458,722	-		EX28DRAFT_1445	0.60	-0.6
1,458,758	+		EX28DRAFT_1445	0.62	-1.2
1,458,759	-		EX28DRAFT_1445	0.62	+0.2
1,458,759	-		EX28DRAFT_1445	0.62	+1.9
1,459,037	+		EX28DRAFT_1445	0.73	+0.2
1,459,049	+		EX28DRAFT_1445	0.73	-1.7
1,459,049	+		EX28DRAFT_1445	0.73	-0.7
1,459,049	+		EX28DRAFT_1445	0.73	+1.2
1,459,049	+		EX28DRAFT_1445	0.73	-0.7
1,459,049	+		EX28DRAFT_1445	0.73	-1.4
1,459,050	-		EX28DRAFT_1445	0.73	+0.8
1,459,050	-		EX28DRAFT_1445	0.73	-0.0
1,459,050	-		EX28DRAFT_1445	0.73	-0.4
1,459,050	-		EX28DRAFT_1445	0.73	-0.5
1,459,050	-		EX28DRAFT_1445	0.73	-1.8
1,459,050	-		EX28DRAFT_1445	0.73	-0.8
1,459,097	+		EX28DRAFT_1445	0.75	-0.3
1,459,143	+		EX28DRAFT_1445	0.77	-0.2
1,459,144	-		EX28DRAFT_1445	0.77	+0.9
1,459,191	+		EX28DRAFT_1445	0.79	+1.1
1,459,192	-		EX28DRAFT_1445	0.79	+1.3
1,459,196	+		EX28DRAFT_1445	0.79	+1.2
1,459,200	-		EX28DRAFT_1445	0.79	-0.4
1,459,200	-		EX28DRAFT_1445	0.79	-1.5
1,459,263	+		EX28DRAFT_1445	0.82	-0.0
1,459,319	+		EX28DRAFT_1445	0.84	+0.3
1,459,356	+		EX28DRAFT_1445	0.85	+4.7
1,459,421	-		EX28DRAFT_1445	0.88	-0.6
1,459,531	-				-0.7
1,459,540	-				-1.3
1,459,749	+				-0.9
1,459,749	+				+1.3
1,459,753	+				-2.0
1,460,006	+		EX28DRAFT_1446	0.40	-0.4
1,460,162	+		EX28DRAFT_1446	0.63	-1.2
1,460,184	+		EX28DRAFT_1446	0.66	-1.3
1,460,238	+		EX28DRAFT_1446	0.74	-0.5
1,460,247	+		EX28DRAFT_1446	0.75	-0.3
1,460,247	+		EX28DRAFT_1446	0.75	-3.4
1,460,248	-		EX28DRAFT_1446	0.75	+0.1
1,460,335	-		EX28DRAFT_1446	0.88	+0.4
1,460,369	+				+0.2
1,460,394	+				-0.7
1,460,394	+				+0.5
1,460,395	-				+1.8
1,460,426	-				+0.9
1,460,426	-				+0.9
1,460,437	+				+0.1
1,460,566	+		EX28DRAFT_1447	0.15	-0.6
1,460,566	+		EX28DRAFT_1447	0.15	-1.5
1,460,567	-		EX28DRAFT_1447	0.15	-0.5
1,460,680	+		EX28DRAFT_1447	0.35	+0.3