Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0982 and EX28DRAFT_0983 overlap by 14 nucleotides EX28DRAFT_0983 and EX28DRAFT_0984 are separated by 28 nucleotides EX28DRAFT_0984 and EX28DRAFT_0985 are separated by 17 nucleotides EX28DRAFT_0985 and EX28DRAFT_0986 are separated by 14 nucleotides
EX28DRAFT_0982: EX28DRAFT_0982 - ABC-type sugar transport systems, permease components, at 983,372 to 984,253
_0982
EX28DRAFT_0983: EX28DRAFT_0983 - ABC-type sugar transport system, permease component, at 984,240 to 985,082
_0983
EX28DRAFT_0984: EX28DRAFT_0984 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 985,111 to 986,163
_0984
EX28DRAFT_0985: EX28DRAFT_0985 - Sugar phosphate isomerases/epimerases, at 986,181 to 986,969
_0985
EX28DRAFT_0986: EX28DRAFT_0986 - Predicted dehydrogenases and related proteins, at 986,984 to 988,039
_0986
Position (kb) 985
986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 984.259 kb on + strand at 984.414 kb on + strand, within EX28DRAFT_0983 at 984.414 kb on + strand, within EX28DRAFT_0983 at 984.592 kb on - strand, within EX28DRAFT_0983 at 984.592 kb on - strand, within EX28DRAFT_0983 at 984.655 kb on - strand, within EX28DRAFT_0983 at 984.655 kb on - strand, within EX28DRAFT_0983 at 984.673 kb on + strand, within EX28DRAFT_0983 at 984.673 kb on + strand, within EX28DRAFT_0983 at 984.674 kb on - strand, within EX28DRAFT_0983 at 984.729 kb on + strand, within EX28DRAFT_0983 at 984.963 kb on + strand, within EX28DRAFT_0983 at 984.965 kb on + strand, within EX28DRAFT_0983 at 985.023 kb on + strand at 985.024 kb on - strand at 985.359 kb on + strand, within EX28DRAFT_0984 at 985.405 kb on + strand, within EX28DRAFT_0984 at 985.406 kb on - strand, within EX28DRAFT_0984 at 985.477 kb on + strand, within EX28DRAFT_0984 at 985.477 kb on + strand, within EX28DRAFT_0984 at 985.478 kb on - strand, within EX28DRAFT_0984 at 985.488 kb on + strand, within EX28DRAFT_0984 at 985.488 kb on + strand, within EX28DRAFT_0984 at 985.489 kb on - strand, within EX28DRAFT_0984 at 985.528 kb on + strand, within EX28DRAFT_0984 at 985.874 kb on - strand, within EX28DRAFT_0984 at 985.874 kb on - strand, within EX28DRAFT_0984 at 985.877 kb on + strand, within EX28DRAFT_0984 at 985.878 kb on - strand, within EX28DRAFT_0984 at 986.045 kb on - strand, within EX28DRAFT_0984 at 986.104 kb on + strand at 986.104 kb on + strand at 986.105 kb on - strand at 986.113 kb on + strand at 986.113 kb on + strand at 986.113 kb on + strand at 986.114 kb on - strand at 986.114 kb on - strand at 986.241 kb on + strand at 986.311 kb on + strand, within EX28DRAFT_0985 at 986.311 kb on + strand, within EX28DRAFT_0985 at 986.673 kb on + strand, within EX28DRAFT_0985 at 986.673 kb on + strand, within EX28DRAFT_0985 at 986.674 kb on - strand, within EX28DRAFT_0985 at 986.721 kb on + strand, within EX28DRAFT_0985 at 986.726 kb on + strand, within EX28DRAFT_0985 at 986.727 kb on - strand, within EX28DRAFT_0985 at 986.877 kb on + strand, within EX28DRAFT_0985 at 986.877 kb on + strand, within EX28DRAFT_0985 at 986.877 kb on + strand, within EX28DRAFT_0985 at 986.886 kb on + strand, within EX28DRAFT_0985 at 986.886 kb on + strand, within EX28DRAFT_0985 at 986.886 kb on + strand, within EX28DRAFT_0985 at 986.886 kb on + strand, within EX28DRAFT_0985 at 986.887 kb on - strand, within EX28DRAFT_0985 at 986.887 kb on - strand, within EX28DRAFT_0985 at 986.895 kb on + strand at 986.895 kb on + strand at 986.895 kb on + strand at 986.895 kb on + strand at 986.895 kb on + strand at 986.895 kb on + strand at 986.896 kb on - strand at 986.952 kb on + strand at 986.968 kb on - strand at 986.996 kb on - strand at 986.996 kb on - strand at 987.149 kb on - strand, within EX28DRAFT_0986
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 984,259 + -0.5 984,414 + EX28DRAFT_0983 0.21 +0.1 984,414 + EX28DRAFT_0983 0.21 +1.3 984,592 - EX28DRAFT_0983 0.42 +2.4 984,592 - EX28DRAFT_0983 0.42 +1.3 984,655 - EX28DRAFT_0983 0.49 +0.8 984,655 - EX28DRAFT_0983 0.49 +2.1 984,673 + EX28DRAFT_0983 0.51 -0.4 984,673 + EX28DRAFT_0983 0.51 -0.1 984,674 - EX28DRAFT_0983 0.51 -0.4 984,729 + EX28DRAFT_0983 0.58 -0.3 984,963 + EX28DRAFT_0983 0.86 -1.6 984,965 + EX28DRAFT_0983 0.86 -2.7 985,023 + -2.9 985,024 - -0.9 985,359 + EX28DRAFT_0984 0.24 +0.2 985,405 + EX28DRAFT_0984 0.28 +2.8 985,406 - EX28DRAFT_0984 0.28 -2.2 985,477 + EX28DRAFT_0984 0.35 +0.6 985,477 + EX28DRAFT_0984 0.35 +0.9 985,478 - EX28DRAFT_0984 0.35 -2.4 985,488 + EX28DRAFT_0984 0.36 -2.4 985,488 + EX28DRAFT_0984 0.36 -0.6 985,489 - EX28DRAFT_0984 0.36 -0.0 985,528 + EX28DRAFT_0984 0.40 +0.1 985,874 - EX28DRAFT_0984 0.72 -0.2 985,874 - EX28DRAFT_0984 0.72 +3.1 985,877 + EX28DRAFT_0984 0.73 +1.3 985,878 - EX28DRAFT_0984 0.73 -1.8 986,045 - EX28DRAFT_0984 0.89 +0.2 986,104 + +0.6 986,104 + -0.8 986,105 - +0.3 986,113 + +1.3 986,113 + -2.0 986,113 + +0.3 986,114 - +0.8 986,114 - +2.2 986,241 + -1.6 986,311 + EX28DRAFT_0985 0.16 -2.1 986,311 + EX28DRAFT_0985 0.16 -0.9 986,673 + EX28DRAFT_0985 0.62 +1.7 986,673 + EX28DRAFT_0985 0.62 +0.3 986,674 - EX28DRAFT_0985 0.62 +0.1 986,721 + EX28DRAFT_0985 0.68 +0.4 986,726 + EX28DRAFT_0985 0.69 +1.3 986,727 - EX28DRAFT_0985 0.69 -1.8 986,877 + EX28DRAFT_0985 0.88 +0.6 986,877 + EX28DRAFT_0985 0.88 -1.1 986,877 + EX28DRAFT_0985 0.88 +1.8 986,886 + EX28DRAFT_0985 0.89 +2.4 986,886 + EX28DRAFT_0985 0.89 +3.7 986,886 + EX28DRAFT_0985 0.89 -1.2 986,886 + EX28DRAFT_0985 0.89 -2.8 986,887 - EX28DRAFT_0985 0.89 +3.8 986,887 - EX28DRAFT_0985 0.89 -0.3 986,895 + +3.1 986,895 + -1.7 986,895 + -0.4 986,895 + +2.4 986,895 + +0.9 986,895 + -2.6 986,896 - +1.6 986,952 + -0.0 986,968 - +0.6 986,996 - -0.7 986,996 - +0.4 987,149 - EX28DRAFT_0986 0.16 +0.5
Or see this region's nucleotide sequence