Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0865 and EX28DRAFT_0866 are separated by 478 nucleotides EX28DRAFT_0866 and EX28DRAFT_0867 are separated by 137 nucleotides EX28DRAFT_0867 and EX28DRAFT_0868 are separated by 302 nucleotides
EX28DRAFT_0865: EX28DRAFT_0865 - Alcohol dehydrogenase, class IV, at 876,222 to 878,900
_0865
EX28DRAFT_0866: EX28DRAFT_0866 - membrane protein, MarC family, at 879,379 to 880,026
_0866
EX28DRAFT_0867: EX28DRAFT_0867 - hypothetical protein, at 880,164 to 880,495
_0867
EX28DRAFT_0868: EX28DRAFT_0868 - ABC-type oligopeptide transport system, periplasmic component, at 880,798 to 882,429
_0868
Position (kb) 879
880
881 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 878.447 kb on + strand, within EX28DRAFT_0865 at 878.448 kb on - strand, within EX28DRAFT_0865 at 878.448 kb on - strand, within EX28DRAFT_0865 at 878.540 kb on + strand, within EX28DRAFT_0865 at 878.540 kb on + strand, within EX28DRAFT_0865 at 878.559 kb on - strand, within EX28DRAFT_0865 at 878.662 kb on + strand at 878.663 kb on - strand at 878.672 kb on - strand at 878.675 kb on + strand at 878.676 kb on - strand at 878.708 kb on + strand at 878.708 kb on + strand at 878.804 kb on + strand at 878.804 kb on + strand at 878.834 kb on - strand at 878.888 kb on + strand at 878.888 kb on + strand at 878.889 kb on - strand at 878.901 kb on - strand at 878.915 kb on - strand at 878.921 kb on + strand at 878.950 kb on - strand at 878.962 kb on - strand at 879.030 kb on + strand at 879.039 kb on - strand at 879.118 kb on + strand at 879.204 kb on - strand at 879.241 kb on - strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.243 kb on - strand at 879.246 kb on + strand at 879.247 kb on - strand at 879.248 kb on + strand at 879.249 kb on - strand at 879.252 kb on + strand at 879.297 kb on + strand at 879.298 kb on - strand at 879.298 kb on - strand at 879.306 kb on - strand at 879.306 kb on - strand at 879.409 kb on + strand at 879.410 kb on - strand at 879.475 kb on - strand, within EX28DRAFT_0866 at 879.477 kb on + strand, within EX28DRAFT_0866 at 879.487 kb on + strand, within EX28DRAFT_0866 at 879.487 kb on + strand, within EX28DRAFT_0866 at 879.511 kb on - strand, within EX28DRAFT_0866 at 879.511 kb on - strand, within EX28DRAFT_0866 at 879.539 kb on + strand, within EX28DRAFT_0866 at 879.539 kb on + strand, within EX28DRAFT_0866 at 879.540 kb on - strand, within EX28DRAFT_0866 at 879.540 kb on - strand, within EX28DRAFT_0866 at 879.543 kb on + strand, within EX28DRAFT_0866 at 879.543 kb on + strand, within EX28DRAFT_0866 at 879.544 kb on - strand, within EX28DRAFT_0866 at 879.548 kb on + strand, within EX28DRAFT_0866 at 879.549 kb on - strand, within EX28DRAFT_0866 at 879.549 kb on - strand, within EX28DRAFT_0866 at 879.549 kb on - strand, within EX28DRAFT_0866 at 879.730 kb on - strand, within EX28DRAFT_0866 at 879.942 kb on + strand, within EX28DRAFT_0866 at 880.268 kb on + strand, within EX28DRAFT_0867 at 880.302 kb on + strand, within EX28DRAFT_0867 at 880.302 kb on + strand, within EX28DRAFT_0867 at 880.457 kb on - strand, within EX28DRAFT_0867 at 880.490 kb on - strand at 880.542 kb on + strand at 880.570 kb on + strand at 880.677 kb on - strand at 880.730 kb on - strand at 880.730 kb on - strand at 880.774 kb on + strand at 880.774 kb on + strand at 880.774 kb on + strand at 880.776 kb on + strand at 880.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 878,447 + EX28DRAFT_0865 0.83 -0.7 878,448 - EX28DRAFT_0865 0.83 +0.5 878,448 - EX28DRAFT_0865 0.83 +1.6 878,540 + EX28DRAFT_0865 0.87 -2.4 878,540 + EX28DRAFT_0865 0.87 +0.8 878,559 - EX28DRAFT_0865 0.87 -0.0 878,662 + -1.3 878,663 - -0.1 878,672 - +1.2 878,675 + +1.3 878,676 - +0.9 878,708 + -2.1 878,708 + -0.7 878,804 + +1.0 878,804 + -1.2 878,834 - -0.8 878,888 + +1.0 878,888 + +1.6 878,889 - +0.6 878,901 - +1.0 878,915 - -0.1 878,921 + +0.4 878,950 - -0.5 878,962 - -0.9 879,030 + -0.6 879,039 - +0.3 879,118 + -0.5 879,204 - +4.4 879,241 - -0.6 879,242 + -1.0 879,242 + +0.7 879,242 + -0.1 879,242 + -0.2 879,242 + -0.1 879,243 - -1.1 879,246 + -0.2 879,247 - -0.5 879,248 + -0.7 879,249 - +3.1 879,252 + -0.7 879,297 + -0.6 879,298 - +2.8 879,298 - +2.1 879,306 - -0.0 879,306 - -0.0 879,409 + -1.7 879,410 - +0.8 879,475 - EX28DRAFT_0866 0.15 -1.0 879,477 + EX28DRAFT_0866 0.15 +0.3 879,487 + EX28DRAFT_0866 0.17 +0.5 879,487 + EX28DRAFT_0866 0.17 -1.7 879,511 - EX28DRAFT_0866 0.20 +0.7 879,511 - EX28DRAFT_0866 0.20 -1.4 879,539 + EX28DRAFT_0866 0.25 +0.7 879,539 + EX28DRAFT_0866 0.25 +2.5 879,540 - EX28DRAFT_0866 0.25 +1.1 879,540 - EX28DRAFT_0866 0.25 -0.4 879,543 + EX28DRAFT_0866 0.25 +0.3 879,543 + EX28DRAFT_0866 0.25 -0.1 879,544 - EX28DRAFT_0866 0.25 +0.0 879,548 + EX28DRAFT_0866 0.26 -1.5 879,549 - EX28DRAFT_0866 0.26 +0.7 879,549 - EX28DRAFT_0866 0.26 +1.7 879,549 - EX28DRAFT_0866 0.26 -1.3 879,730 - EX28DRAFT_0866 0.54 +0.8 879,942 + EX28DRAFT_0866 0.87 -0.2 880,268 + EX28DRAFT_0867 0.31 -1.0 880,302 + EX28DRAFT_0867 0.42 +2.1 880,302 + EX28DRAFT_0867 0.42 +1.9 880,457 - EX28DRAFT_0867 0.88 -0.6 880,490 - -1.0 880,542 + -0.3 880,570 + -0.5 880,677 - -0.8 880,730 - +0.9 880,730 - +2.2 880,774 + -0.9 880,774 + -0.2 880,774 + +1.3 880,776 + +1.6 880,789 - -0.1
Or see this region's nucleotide sequence