Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0852 and EX28DRAFT_0853 overlap by 4 nucleotides EX28DRAFT_0853 and EX28DRAFT_0854 overlap by 1 nucleotides EX28DRAFT_0854 and EX28DRAFT_0855 overlap by 4 nucleotides
EX28DRAFT_0852: EX28DRAFT_0852 - respiratory nitrate reductase beta subunit, at 864,543 to 866,078
_0852
EX28DRAFT_0853: EX28DRAFT_0853 - respiratory nitrate reductase chaperone NarJ, at 866,075 to 866,785
_0853
EX28DRAFT_0854: EX28DRAFT_0854 - respiratory nitrate reductase, gamma subunit, at 866,785 to 867,462
_0854
EX28DRAFT_0855: EX28DRAFT_0855 - Predicted permease, DMT superfamily, at 867,459 to 868,355
_0855
Position (kb) 866
867 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 865.075 kb on - strand, within EX28DRAFT_0852 at 865.144 kb on - strand, within EX28DRAFT_0852 at 865.202 kb on + strand, within EX28DRAFT_0852 at 865.202 kb on + strand, within EX28DRAFT_0852 at 865.203 kb on - strand, within EX28DRAFT_0852 at 865.203 kb on - strand, within EX28DRAFT_0852 at 865.602 kb on + strand, within EX28DRAFT_0852 at 865.691 kb on + strand, within EX28DRAFT_0852 at 865.691 kb on + strand, within EX28DRAFT_0852 at 865.757 kb on + strand, within EX28DRAFT_0852 at 865.763 kb on + strand, within EX28DRAFT_0852 at 865.869 kb on + strand, within EX28DRAFT_0852 at 865.869 kb on + strand, within EX28DRAFT_0852 at 865.869 kb on + strand, within EX28DRAFT_0852 at 865.869 kb on + strand, within EX28DRAFT_0852 at 865.869 kb on + strand, within EX28DRAFT_0852 at 865.870 kb on - strand, within EX28DRAFT_0852 at 865.870 kb on - strand, within EX28DRAFT_0852 at 865.870 kb on - strand, within EX28DRAFT_0852 at 865.893 kb on + strand, within EX28DRAFT_0852 at 865.893 kb on + strand, within EX28DRAFT_0852 at 865.974 kb on - strand at 866.227 kb on - strand, within EX28DRAFT_0853 at 866.799 kb on + strand at 866.799 kb on + strand at 866.800 kb on - strand at 866.825 kb on - strand at 867.013 kb on + strand, within EX28DRAFT_0854 at 867.013 kb on + strand, within EX28DRAFT_0854 at 867.013 kb on + strand, within EX28DRAFT_0854 at 867.014 kb on - strand, within EX28DRAFT_0854 at 867.014 kb on - strand, within EX28DRAFT_0854 at 867.234 kb on + strand, within EX28DRAFT_0854 at 867.235 kb on - strand, within EX28DRAFT_0854 at 867.399 kb on + strand at 867.400 kb on - strand at 867.400 kb on - strand at 867.421 kb on + strand at 867.629 kb on + strand, within EX28DRAFT_0855 at 867.630 kb on - strand, within EX28DRAFT_0855 at 867.630 kb on - strand, within EX28DRAFT_0855 at 867.680 kb on - strand, within EX28DRAFT_0855 at 867.692 kb on - strand, within EX28DRAFT_0855 at 867.692 kb on - strand, within EX28DRAFT_0855 at 867.696 kb on - strand, within EX28DRAFT_0855 at 867.705 kb on - strand, within EX28DRAFT_0855 at 867.778 kb on - strand, within EX28DRAFT_0855
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 865,075 - EX28DRAFT_0852 0.35 -2.9 865,144 - EX28DRAFT_0852 0.39 -2.5 865,202 + EX28DRAFT_0852 0.43 -0.3 865,202 + EX28DRAFT_0852 0.43 -1.0 865,203 - EX28DRAFT_0852 0.43 -1.5 865,203 - EX28DRAFT_0852 0.43 -0.5 865,602 + EX28DRAFT_0852 0.69 +0.2 865,691 + EX28DRAFT_0852 0.75 -2.2 865,691 + EX28DRAFT_0852 0.75 -3.6 865,757 + EX28DRAFT_0852 0.79 -0.5 865,763 + EX28DRAFT_0852 0.79 -0.2 865,869 + EX28DRAFT_0852 0.86 -3.4 865,869 + EX28DRAFT_0852 0.86 -0.1 865,869 + EX28DRAFT_0852 0.86 -1.5 865,869 + EX28DRAFT_0852 0.86 -1.8 865,869 + EX28DRAFT_0852 0.86 +0.1 865,870 - EX28DRAFT_0852 0.86 -3.2 865,870 - EX28DRAFT_0852 0.86 -2.9 865,870 - EX28DRAFT_0852 0.86 -3.0 865,893 + EX28DRAFT_0852 0.88 -1.6 865,893 + EX28DRAFT_0852 0.88 -0.5 865,974 - -4.1 866,227 - EX28DRAFT_0853 0.21 -0.6 866,799 + -0.6 866,799 + -0.2 866,800 - -1.0 866,825 - -1.5 867,013 + EX28DRAFT_0854 0.34 +0.4 867,013 + EX28DRAFT_0854 0.34 -1.3 867,013 + EX28DRAFT_0854 0.34 -1.6 867,014 - EX28DRAFT_0854 0.34 +1.2 867,014 - EX28DRAFT_0854 0.34 +0.2 867,234 + EX28DRAFT_0854 0.66 +0.3 867,235 - EX28DRAFT_0854 0.66 +0.1 867,399 + -1.3 867,400 - +1.0 867,400 - -1.1 867,421 + +0.1 867,629 + EX28DRAFT_0855 0.19 -0.0 867,630 - EX28DRAFT_0855 0.19 +3.1 867,630 - EX28DRAFT_0855 0.19 +0.6 867,680 - EX28DRAFT_0855 0.25 +0.8 867,692 - EX28DRAFT_0855 0.26 +0.8 867,692 - EX28DRAFT_0855 0.26 -0.9 867,696 - EX28DRAFT_0855 0.26 -1.7 867,705 - EX28DRAFT_0855 0.27 +0.8 867,778 - EX28DRAFT_0855 0.36 -0.1
Or see this region's nucleotide sequence