Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0852

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0851 and EX28DRAFT_0852 overlap by 4 nucleotidesEX28DRAFT_0852 and EX28DRAFT_0853 overlap by 4 nucleotidesEX28DRAFT_0853 and EX28DRAFT_0854 overlap by 1 nucleotides EX28DRAFT_0851: EX28DRAFT_0851 - respiratory nitrate reductase, alpha subunit, at 860,803 to 864,546 _0851 EX28DRAFT_0852: EX28DRAFT_0852 - respiratory nitrate reductase beta subunit, at 864,543 to 866,078 _0852 EX28DRAFT_0853: EX28DRAFT_0853 - respiratory nitrate reductase chaperone NarJ, at 866,075 to 866,785 _0853 EX28DRAFT_0854: EX28DRAFT_0854 - respiratory nitrate reductase, gamma subunit, at 866,785 to 867,462 _0854 Position (kb) 864 865 866 867Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 863.599 kb on + strand, within EX28DRAFT_0851at 863.823 kb on + strand, within EX28DRAFT_0851at 863.869 kb on + strand, within EX28DRAFT_0851at 864.106 kb on + strand, within EX28DRAFT_0851at 864.290 kb on - strandat 864.307 kb on - strandat 864.307 kb on - strandat 864.312 kb on + strandat 864.433 kb on + strandat 864.434 kb on - strandat 864.434 kb on - strandat 864.447 kb on - strandat 864.480 kb on + strandat 864.480 kb on + strandat 864.481 kb on - strandat 864.496 kb on - strandat 864.516 kb on + strandat 864.540 kb on - strandat 864.540 kb on - strandat 864.540 kb on - strandat 864.654 kb on + strandat 864.800 kb on + strand, within EX28DRAFT_0852at 864.841 kb on - strand, within EX28DRAFT_0852at 864.843 kb on + strand, within EX28DRAFT_0852at 864.843 kb on + strand, within EX28DRAFT_0852at 865.045 kb on - strand, within EX28DRAFT_0852at 865.061 kb on + strand, within EX28DRAFT_0852at 865.074 kb on + strand, within EX28DRAFT_0852at 865.075 kb on - strand, within EX28DRAFT_0852at 865.144 kb on - strand, within EX28DRAFT_0852at 865.202 kb on + strand, within EX28DRAFT_0852at 865.202 kb on + strand, within EX28DRAFT_0852at 865.203 kb on - strand, within EX28DRAFT_0852at 865.203 kb on - strand, within EX28DRAFT_0852at 865.602 kb on + strand, within EX28DRAFT_0852at 865.691 kb on + strand, within EX28DRAFT_0852at 865.691 kb on + strand, within EX28DRAFT_0852at 865.757 kb on + strand, within EX28DRAFT_0852at 865.763 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.893 kb on + strand, within EX28DRAFT_0852at 865.893 kb on + strand, within EX28DRAFT_0852at 865.974 kb on - strandat 866.227 kb on - strand, within EX28DRAFT_0853at 866.799 kb on + strandat 866.799 kb on + strandat 866.800 kb on - strandat 866.825 kb on - strandat 867.013 kb on + strand, within EX28DRAFT_0854at 867.013 kb on + strand, within EX28DRAFT_0854at 867.013 kb on + strand, within EX28DRAFT_0854at 867.014 kb on - strand, within EX28DRAFT_0854at 867.014 kb on - strand, within EX28DRAFT_0854

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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863,599 + EX28DRAFT_0851 0.75 -0.3
863,823 + EX28DRAFT_0851 0.81 +0.7
863,869 + EX28DRAFT_0851 0.82 -0.9
864,106 + EX28DRAFT_0851 0.88 -2.2
864,290 - -0.4
864,307 - -1.9
864,307 - -0.5
864,312 + -1.6
864,433 + -3.3
864,434 - +0.1
864,434 - -1.8
864,447 - -3.2
864,480 + -2.3
864,480 + +0.3
864,481 - -0.5
864,496 - +4.1
864,516 + -0.4
864,540 - -0.7
864,540 - -0.7
864,540 - +0.5
864,654 + -0.4
864,800 + EX28DRAFT_0852 0.17 -0.3
864,841 - EX28DRAFT_0852 0.19 -1.7
864,843 + EX28DRAFT_0852 0.20 +0.7
864,843 + EX28DRAFT_0852 0.20 +0.1
865,045 - EX28DRAFT_0852 0.33 -0.1
865,061 + EX28DRAFT_0852 0.34 -1.3
865,074 + EX28DRAFT_0852 0.35 -2.3
865,075 - EX28DRAFT_0852 0.35 -2.9
865,144 - EX28DRAFT_0852 0.39 -2.5
865,202 + EX28DRAFT_0852 0.43 -0.3
865,202 + EX28DRAFT_0852 0.43 -1.0
865,203 - EX28DRAFT_0852 0.43 -1.5
865,203 - EX28DRAFT_0852 0.43 -0.5
865,602 + EX28DRAFT_0852 0.69 +0.2
865,691 + EX28DRAFT_0852 0.75 -2.2
865,691 + EX28DRAFT_0852 0.75 -3.6
865,757 + EX28DRAFT_0852 0.79 -0.5
865,763 + EX28DRAFT_0852 0.79 -0.2
865,869 + EX28DRAFT_0852 0.86 -3.4
865,869 + EX28DRAFT_0852 0.86 -0.1
865,869 + EX28DRAFT_0852 0.86 -1.5
865,869 + EX28DRAFT_0852 0.86 -1.8
865,869 + EX28DRAFT_0852 0.86 +0.1
865,870 - EX28DRAFT_0852 0.86 -3.2
865,870 - EX28DRAFT_0852 0.86 -2.9
865,870 - EX28DRAFT_0852 0.86 -3.0
865,893 + EX28DRAFT_0852 0.88 -1.6
865,893 + EX28DRAFT_0852 0.88 -0.5
865,974 - -4.1
866,227 - EX28DRAFT_0853 0.21 -0.6
866,799 + -0.6
866,799 + -0.2
866,800 - -1.0
866,825 - -1.5
867,013 + EX28DRAFT_0854 0.34 +0.4
867,013 + EX28DRAFT_0854 0.34 -1.3
867,013 + EX28DRAFT_0854 0.34 -1.6
867,014 - EX28DRAFT_0854 0.34 +1.2
867,014 - EX28DRAFT_0854 0.34 +0.2

Or see this region's nucleotide sequence