Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0847 and EX28DRAFT_0848 are separated by 3 nucleotides EX28DRAFT_0848 and EX28DRAFT_0849 overlap by 8 nucleotides EX28DRAFT_0849 and EX28DRAFT_0850 are separated by 309 nucleotides
EX28DRAFT_0847: EX28DRAFT_0847 - Protein of unknown function (DUF3442), at 854,865 to 856,271
_0847
EX28DRAFT_0848: EX28DRAFT_0848 - two component transcriptional regulator, LuxR family, at 856,275 to 856,925
_0848
EX28DRAFT_0849: EX28DRAFT_0849 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 856,918 to 858,714
_0849
EX28DRAFT_0850: EX28DRAFT_0850 - nitrite extrusion protein (nitrite facilitator), at 859,024 to 860,421
_0850
Position (kb) 856
857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 855.974 kb on + strand, within EX28DRAFT_0847 at 856.225 kb on + strand at 856.226 kb on - strand at 856.269 kb on + strand at 856.270 kb on - strand at 856.270 kb on - strand at 856.346 kb on + strand, within EX28DRAFT_0848 at 856.347 kb on - strand, within EX28DRAFT_0848 at 856.347 kb on - strand, within EX28DRAFT_0848 at 856.743 kb on - strand, within EX28DRAFT_0848 at 856.948 kb on - strand at 856.965 kb on + strand at 856.965 kb on + strand at 857.052 kb on + strand at 857.053 kb on - strand at 857.218 kb on + strand, within EX28DRAFT_0849 at 857.218 kb on + strand, within EX28DRAFT_0849 at 857.219 kb on - strand, within EX28DRAFT_0849 at 857.224 kb on + strand, within EX28DRAFT_0849 at 857.224 kb on + strand, within EX28DRAFT_0849 at 857.224 kb on + strand, within EX28DRAFT_0849 at 857.225 kb on - strand, within EX28DRAFT_0849 at 857.225 kb on - strand, within EX28DRAFT_0849 at 857.225 kb on - strand, within EX28DRAFT_0849 at 857.298 kb on + strand, within EX28DRAFT_0849 at 857.688 kb on + strand, within EX28DRAFT_0849 at 858.229 kb on - strand, within EX28DRAFT_0849 at 858.282 kb on + strand, within EX28DRAFT_0849 at 858.417 kb on + strand, within EX28DRAFT_0849 at 858.596 kb on - strand at 858.605 kb on - strand at 858.697 kb on + strand at 858.698 kb on - strand at 858.714 kb on + strand at 858.714 kb on + strand at 858.715 kb on - strand at 858.781 kb on + strand at 858.782 kb on - strand at 858.783 kb on + strand at 858.846 kb on - strand at 858.980 kb on - strand at 858.988 kb on - strand at 859.023 kb on + strand at 859.024 kb on - strand at 859.121 kb on + strand at 859.121 kb on + strand at 859.136 kb on + strand at 859.224 kb on + strand, within EX28DRAFT_0850 at 859.306 kb on - strand, within EX28DRAFT_0850 at 859.405 kb on - strand, within EX28DRAFT_0850 at 859.405 kb on - strand, within EX28DRAFT_0850 at 859.429 kb on - strand, within EX28DRAFT_0850 at 859.548 kb on + strand, within EX28DRAFT_0850 at 859.549 kb on - strand, within EX28DRAFT_0850
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 855,974 + EX28DRAFT_0847 0.79 -0.4 856,225 + +0.1 856,226 - +0.7 856,269 + +0.3 856,270 - -0.4 856,270 - -0.5 856,346 + EX28DRAFT_0848 0.11 +1.5 856,347 - EX28DRAFT_0848 0.11 -1.3 856,347 - EX28DRAFT_0848 0.11 +0.9 856,743 - EX28DRAFT_0848 0.72 -2.4 856,948 - -1.1 856,965 + -1.3 856,965 + +1.8 857,052 + -0.4 857,053 - -2.9 857,218 + EX28DRAFT_0849 0.17 -0.6 857,218 + EX28DRAFT_0849 0.17 +2.3 857,219 - EX28DRAFT_0849 0.17 -0.2 857,224 + EX28DRAFT_0849 0.17 -0.4 857,224 + EX28DRAFT_0849 0.17 +1.5 857,224 + EX28DRAFT_0849 0.17 -0.7 857,225 - EX28DRAFT_0849 0.17 -1.1 857,225 - EX28DRAFT_0849 0.17 -1.5 857,225 - EX28DRAFT_0849 0.17 +0.2 857,298 + EX28DRAFT_0849 0.21 -0.2 857,688 + EX28DRAFT_0849 0.43 -0.5 858,229 - EX28DRAFT_0849 0.73 +2.1 858,282 + EX28DRAFT_0849 0.76 -1.4 858,417 + EX28DRAFT_0849 0.83 -0.4 858,596 - -0.5 858,605 - -0.5 858,697 + +0.5 858,698 - -1.5 858,714 + +0.8 858,714 + +0.5 858,715 - +0.6 858,781 + -0.3 858,782 - -1.8 858,783 + -1.0 858,846 - +0.5 858,980 - +0.7 858,988 - +0.1 859,023 + -0.8 859,024 - -0.8 859,121 + +0.6 859,121 + -0.4 859,136 + -1.9 859,224 + EX28DRAFT_0850 0.14 +1.8 859,306 - EX28DRAFT_0850 0.20 -2.2 859,405 - EX28DRAFT_0850 0.27 -0.3 859,405 - EX28DRAFT_0850 0.27 -0.2 859,429 - EX28DRAFT_0850 0.29 -1.9 859,548 + EX28DRAFT_0850 0.37 +2.8 859,549 - EX28DRAFT_0850 0.38 -1.1
Or see this region's nucleotide sequence