Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0845 and EX28DRAFT_0846 overlap by 4 nucleotides EX28DRAFT_0846 and EX28DRAFT_0847 are separated by 47 nucleotides
EX28DRAFT_0845: EX28DRAFT_0845 - nitrite reductase [NAD(P)H], large subunit/nitrite reductase [NAD(P)H], small subunit, at 848,309 to 852,295
_0845
EX28DRAFT_0846: EX28DRAFT_0846 - Anaerobic dehydrogenases, typically selenocysteine-containing, at 852,292 to 854,817
_0846
EX28DRAFT_0847: EX28DRAFT_0847 - Protein of unknown function (DUF3442), at 854,865 to 856,271
_0847
Position (kb) 852
853
854
855 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 851.603 kb on + strand, within EX28DRAFT_0845 at 851.603 kb on + strand, within EX28DRAFT_0845 at 851.603 kb on + strand, within EX28DRAFT_0845 at 851.709 kb on - strand, within EX28DRAFT_0845 at 851.709 kb on - strand, within EX28DRAFT_0845 at 852.155 kb on + strand at 852.607 kb on + strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.611 kb on - strand, within EX28DRAFT_0846 at 852.701 kb on - strand, within EX28DRAFT_0846 at 852.958 kb on - strand, within EX28DRAFT_0846 at 853.029 kb on + strand, within EX28DRAFT_0846 at 853.031 kb on + strand, within EX28DRAFT_0846 at 853.032 kb on - strand, within EX28DRAFT_0846 at 853.032 kb on - strand, within EX28DRAFT_0846 at 853.032 kb on - strand, within EX28DRAFT_0846 at 853.043 kb on - strand, within EX28DRAFT_0846 at 853.054 kb on - strand, within EX28DRAFT_0846 at 853.081 kb on + strand, within EX28DRAFT_0846 at 853.081 kb on + strand, within EX28DRAFT_0846 at 853.900 kb on + strand, within EX28DRAFT_0846 at 853.945 kb on - strand, within EX28DRAFT_0846 at 853.977 kb on + strand, within EX28DRAFT_0846 at 853.978 kb on - strand, within EX28DRAFT_0846 at 854.284 kb on + strand, within EX28DRAFT_0846 at 854.284 kb on + strand, within EX28DRAFT_0846 at 854.284 kb on + strand, within EX28DRAFT_0846 at 854.285 kb on - strand, within EX28DRAFT_0846 at 854.285 kb on - strand, within EX28DRAFT_0846 at 854.285 kb on - strand, within EX28DRAFT_0846 at 854.389 kb on + strand, within EX28DRAFT_0846 at 854.390 kb on - strand, within EX28DRAFT_0846 at 854.820 kb on + strand at 854.820 kb on + strand at 854.831 kb on + strand at 854.832 kb on - strand at 854.851 kb on + strand at 854.856 kb on - strand at 854.872 kb on + strand at 854.873 kb on - strand at 854.896 kb on + strand at 854.896 kb on + strand at 854.897 kb on - strand at 854.897 kb on - strand at 854.897 kb on - strand at 854.899 kb on + strand at 854.899 kb on + strand at 854.948 kb on + strand at 854.976 kb on - strand at 854.979 kb on - strand at 855.218 kb on - strand, within EX28DRAFT_0847 at 855.400 kb on - strand, within EX28DRAFT_0847 at 855.483 kb on + strand, within EX28DRAFT_0847 at 855.483 kb on + strand, within EX28DRAFT_0847 at 855.484 kb on - strand, within EX28DRAFT_0847 at 855.484 kb on - strand, within EX28DRAFT_0847 at 855.484 kb on - strand, within EX28DRAFT_0847 at 855.537 kb on - strand, within EX28DRAFT_0847 at 855.618 kb on + strand, within EX28DRAFT_0847 at 855.618 kb on + strand, within EX28DRAFT_0847 at 855.696 kb on + strand, within EX28DRAFT_0847 at 855.696 kb on + strand, within EX28DRAFT_0847 at 855.696 kb on + strand, within EX28DRAFT_0847 at 855.697 kb on - strand, within EX28DRAFT_0847 at 855.697 kb on - strand, within EX28DRAFT_0847 at 855.697 kb on - strand, within EX28DRAFT_0847 at 855.765 kb on - strand, within EX28DRAFT_0847 at 855.765 kb on - strand, within EX28DRAFT_0847
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 851,603 + EX28DRAFT_0845 0.83 +1.3 851,603 + EX28DRAFT_0845 0.83 +0.5 851,603 + EX28DRAFT_0845 0.83 -1.9 851,709 - EX28DRAFT_0845 0.85 -1.2 851,709 - EX28DRAFT_0845 0.85 +1.5 852,155 + +0.7 852,607 + EX28DRAFT_0846 0.12 +0.4 852,608 - EX28DRAFT_0846 0.13 -0.9 852,608 - EX28DRAFT_0846 0.13 +0.9 852,608 - EX28DRAFT_0846 0.13 +0.9 852,608 - EX28DRAFT_0846 0.13 -0.5 852,608 - EX28DRAFT_0846 0.13 +2.2 852,611 - EX28DRAFT_0846 0.13 +1.1 852,701 - EX28DRAFT_0846 0.16 -1.1 852,958 - EX28DRAFT_0846 0.26 -0.4 853,029 + EX28DRAFT_0846 0.29 -0.7 853,031 + EX28DRAFT_0846 0.29 +0.2 853,032 - EX28DRAFT_0846 0.29 +0.3 853,032 - EX28DRAFT_0846 0.29 +0.1 853,032 - EX28DRAFT_0846 0.29 -0.4 853,043 - EX28DRAFT_0846 0.30 +1.5 853,054 - EX28DRAFT_0846 0.30 -1.5 853,081 + EX28DRAFT_0846 0.31 +1.9 853,081 + EX28DRAFT_0846 0.31 +0.8 853,900 + EX28DRAFT_0846 0.64 -1.6 853,945 - EX28DRAFT_0846 0.65 -0.8 853,977 + EX28DRAFT_0846 0.67 +1.1 853,978 - EX28DRAFT_0846 0.67 -1.9 854,284 + EX28DRAFT_0846 0.79 +1.1 854,284 + EX28DRAFT_0846 0.79 -0.8 854,284 + EX28DRAFT_0846 0.79 -0.2 854,285 - EX28DRAFT_0846 0.79 +3.1 854,285 - EX28DRAFT_0846 0.79 -2.1 854,285 - EX28DRAFT_0846 0.79 -1.5 854,389 + EX28DRAFT_0846 0.83 -1.3 854,390 - EX28DRAFT_0846 0.83 -0.4 854,820 + -0.2 854,820 + +1.8 854,831 + -0.8 854,832 - -1.1 854,851 + -2.4 854,856 - +0.9 854,872 + +0.0 854,873 - +0.3 854,896 + -1.0 854,896 + +1.2 854,897 - +0.1 854,897 - -0.8 854,897 - -0.1 854,899 + -0.6 854,899 + -1.8 854,948 + -1.5 854,976 - -0.0 854,979 - +0.7 855,218 - EX28DRAFT_0847 0.25 -0.8 855,400 - EX28DRAFT_0847 0.38 +0.7 855,483 + EX28DRAFT_0847 0.44 +0.3 855,483 + EX28DRAFT_0847 0.44 +1.5 855,484 - EX28DRAFT_0847 0.44 +1.4 855,484 - EX28DRAFT_0847 0.44 -0.4 855,484 - EX28DRAFT_0847 0.44 -0.0 855,537 - EX28DRAFT_0847 0.48 +0.3 855,618 + EX28DRAFT_0847 0.54 +0.2 855,618 + EX28DRAFT_0847 0.54 +0.3 855,696 + EX28DRAFT_0847 0.59 -0.1 855,696 + EX28DRAFT_0847 0.59 +0.2 855,696 + EX28DRAFT_0847 0.59 -0.2 855,697 - EX28DRAFT_0847 0.59 -1.0 855,697 - EX28DRAFT_0847 0.59 -0.2 855,697 - EX28DRAFT_0847 0.59 +0.3 855,765 - EX28DRAFT_0847 0.64 -0.5 855,765 - EX28DRAFT_0847 0.64 -0.1
Or see this region's nucleotide sequence