Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0766 and EX28DRAFT_0767 are separated by 9 nucleotides EX28DRAFT_0767 and EX28DRAFT_0768 are separated by 94 nucleotides
EX28DRAFT_0766: EX28DRAFT_0766 - Glycine/D-amino acid oxidases (deaminating), at 762,592 to 763,890
_0766
EX28DRAFT_0767: EX28DRAFT_0767 - alanine racemase, at 763,900 to 764,970
_0767
EX28DRAFT_0768: EX28DRAFT_0768 - NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain, at 765,065 to 766,798
_0768
Position (kb) 763
764
765 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 762.931 kb on + strand, within EX28DRAFT_0766 at 763.143 kb on + strand, within EX28DRAFT_0766 at 763.201 kb on - strand, within EX28DRAFT_0766 at 763.336 kb on + strand, within EX28DRAFT_0766 at 763.337 kb on - strand, within EX28DRAFT_0766 at 763.481 kb on - strand, within EX28DRAFT_0766 at 763.849 kb on - strand at 763.884 kb on + strand at 763.889 kb on - strand at 763.889 kb on - strand at 764.008 kb on - strand, within EX28DRAFT_0767 at 764.008 kb on - strand, within EX28DRAFT_0767 at 764.180 kb on - strand, within EX28DRAFT_0767 at 764.180 kb on - strand, within EX28DRAFT_0767 at 764.257 kb on - strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.316 kb on + strand, within EX28DRAFT_0767 at 764.404 kb on - strand, within EX28DRAFT_0767 at 764.506 kb on + strand, within EX28DRAFT_0767 at 764.508 kb on + strand, within EX28DRAFT_0767 at 764.536 kb on + strand, within EX28DRAFT_0767 at 764.536 kb on + strand, within EX28DRAFT_0767 at 764.795 kb on + strand, within EX28DRAFT_0767 at 764.795 kb on + strand, within EX28DRAFT_0767 at 764.795 kb on + strand, within EX28DRAFT_0767 at 764.796 kb on - strand, within EX28DRAFT_0767 at 764.799 kb on + strand, within EX28DRAFT_0767 at 764.799 kb on + strand, within EX28DRAFT_0767 at 764.806 kb on - strand, within EX28DRAFT_0767 at 765.516 kb on - strand, within EX28DRAFT_0768 at 765.516 kb on - strand, within EX28DRAFT_0768
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 762,931 + EX28DRAFT_0766 0.26 -1.3 763,143 + EX28DRAFT_0766 0.42 +1.2 763,201 - EX28DRAFT_0766 0.47 -0.3 763,336 + EX28DRAFT_0766 0.57 -2.2 763,337 - EX28DRAFT_0766 0.57 -0.9 763,481 - EX28DRAFT_0766 0.68 -0.6 763,849 - -0.9 763,884 + -0.3 763,889 - -0.2 763,889 - +1.1 764,008 - EX28DRAFT_0767 0.10 +0.4 764,008 - EX28DRAFT_0767 0.10 +2.1 764,180 - EX28DRAFT_0767 0.26 +0.0 764,180 - EX28DRAFT_0767 0.26 -2.4 764,257 - EX28DRAFT_0767 0.33 -1.4 764,260 + EX28DRAFT_0767 0.34 -1.7 764,260 + EX28DRAFT_0767 0.34 +0.7 764,260 + EX28DRAFT_0767 0.34 -1.6 764,260 + EX28DRAFT_0767 0.34 +0.7 764,261 - EX28DRAFT_0767 0.34 -0.8 764,261 - EX28DRAFT_0767 0.34 -0.1 764,261 - EX28DRAFT_0767 0.34 +1.8 764,261 - EX28DRAFT_0767 0.34 -1.3 764,316 + EX28DRAFT_0767 0.39 -0.1 764,404 - EX28DRAFT_0767 0.47 -1.3 764,506 + EX28DRAFT_0767 0.57 -0.8 764,508 + EX28DRAFT_0767 0.57 -1.4 764,536 + EX28DRAFT_0767 0.59 -0.0 764,536 + EX28DRAFT_0767 0.59 -0.4 764,795 + EX28DRAFT_0767 0.84 -0.7 764,795 + EX28DRAFT_0767 0.84 -1.1 764,795 + EX28DRAFT_0767 0.84 -1.6 764,796 - EX28DRAFT_0767 0.84 -1.3 764,799 + EX28DRAFT_0767 0.84 +0.8 764,799 + EX28DRAFT_0767 0.84 -0.4 764,806 - EX28DRAFT_0767 0.85 -1.8 765,516 - EX28DRAFT_0768 0.26 +4.9 765,516 - EX28DRAFT_0768 0.26 +2.1
Or see this region's nucleotide sequence