Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0765 and EX28DRAFT_0766 are separated by 321 nucleotides EX28DRAFT_0766 and EX28DRAFT_0767 are separated by 9 nucleotides
EX28DRAFT_0765: EX28DRAFT_0765 - Uncharacterized conserved protein, at 760,738 to 762,270
_0765
EX28DRAFT_0766: EX28DRAFT_0766 - Glycine/D-amino acid oxidases (deaminating), at 762,592 to 763,890
_0766
EX28DRAFT_0767: EX28DRAFT_0767 - alanine racemase, at 763,900 to 764,970
_0767
Position (kb) 762
763
764 Strain fitness (log2 ratio) -2
-1
0
1
2 at 761.648 kb on + strand, within EX28DRAFT_0765 at 761.649 kb on - strand, within EX28DRAFT_0765 at 761.712 kb on - strand, within EX28DRAFT_0765 at 761.800 kb on - strand, within EX28DRAFT_0765 at 761.804 kb on + strand, within EX28DRAFT_0765 at 761.804 kb on + strand, within EX28DRAFT_0765 at 761.804 kb on + strand, within EX28DRAFT_0765 at 761.805 kb on - strand, within EX28DRAFT_0765 at 761.867 kb on + strand, within EX28DRAFT_0765 at 761.872 kb on - strand, within EX28DRAFT_0765 at 761.950 kb on + strand, within EX28DRAFT_0765 at 761.950 kb on + strand, within EX28DRAFT_0765 at 761.951 kb on - strand, within EX28DRAFT_0765 at 761.955 kb on - strand, within EX28DRAFT_0765 at 761.977 kb on - strand, within EX28DRAFT_0765 at 761.990 kb on + strand, within EX28DRAFT_0765 at 762.015 kb on + strand, within EX28DRAFT_0765 at 762.015 kb on + strand, within EX28DRAFT_0765 at 762.015 kb on + strand, within EX28DRAFT_0765 at 762.016 kb on - strand, within EX28DRAFT_0765 at 762.016 kb on - strand, within EX28DRAFT_0765 at 762.016 kb on - strand, within EX28DRAFT_0765 at 762.017 kb on + strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.069 kb on + strand, within EX28DRAFT_0765 at 762.069 kb on + strand, within EX28DRAFT_0765 at 762.070 kb on - strand, within EX28DRAFT_0765 at 762.070 kb on - strand, within EX28DRAFT_0765 at 762.070 kb on - strand, within EX28DRAFT_0765 at 762.117 kb on + strand at 762.118 kb on - strand at 762.145 kb on - strand at 762.189 kb on - strand at 762.325 kb on + strand at 762.325 kb on + strand at 762.325 kb on + strand at 762.495 kb on + strand at 762.495 kb on + strand at 762.579 kb on + strand at 762.579 kb on + strand at 762.605 kb on + strand at 762.606 kb on - strand at 762.644 kb on - strand at 762.644 kb on - strand at 762.647 kb on + strand at 762.647 kb on + strand at 762.647 kb on + strand at 762.647 kb on + strand at 762.648 kb on - strand at 762.648 kb on - strand at 762.668 kb on + strand at 762.893 kb on - strand, within EX28DRAFT_0766 at 762.931 kb on + strand, within EX28DRAFT_0766 at 763.143 kb on + strand, within EX28DRAFT_0766 at 763.201 kb on - strand, within EX28DRAFT_0766 at 763.336 kb on + strand, within EX28DRAFT_0766 at 763.337 kb on - strand, within EX28DRAFT_0766 at 763.481 kb on - strand, within EX28DRAFT_0766 at 763.849 kb on - strand at 763.884 kb on + strand at 763.889 kb on - strand at 763.889 kb on - strand at 764.008 kb on - strand, within EX28DRAFT_0767 at 764.008 kb on - strand, within EX28DRAFT_0767 at 764.180 kb on - strand, within EX28DRAFT_0767 at 764.180 kb on - strand, within EX28DRAFT_0767 at 764.257 kb on - strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.316 kb on + strand, within EX28DRAFT_0767 at 764.404 kb on - strand, within EX28DRAFT_0767 at 764.506 kb on + strand, within EX28DRAFT_0767 at 764.508 kb on + strand, within EX28DRAFT_0767 at 764.536 kb on + strand, within EX28DRAFT_0767 at 764.536 kb on + strand, within EX28DRAFT_0767 at 764.795 kb on + strand, within EX28DRAFT_0767 at 764.795 kb on + strand, within EX28DRAFT_0767 at 764.795 kb on + strand, within EX28DRAFT_0767 at 764.796 kb on - strand, within EX28DRAFT_0767 at 764.799 kb on + strand, within EX28DRAFT_0767 at 764.799 kb on + strand, within EX28DRAFT_0767 at 764.806 kb on - strand, within EX28DRAFT_0767
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 761,648 + EX28DRAFT_0765 0.59 -0.4 761,649 - EX28DRAFT_0765 0.59 -0.3 761,712 - EX28DRAFT_0765 0.64 +0.4 761,800 - EX28DRAFT_0765 0.69 +0.4 761,804 + EX28DRAFT_0765 0.70 -1.4 761,804 + EX28DRAFT_0765 0.70 -0.4 761,804 + EX28DRAFT_0765 0.70 -0.6 761,805 - EX28DRAFT_0765 0.70 -0.1 761,867 + EX28DRAFT_0765 0.74 +0.1 761,872 - EX28DRAFT_0765 0.74 +0.1 761,950 + EX28DRAFT_0765 0.79 +1.4 761,950 + EX28DRAFT_0765 0.79 -0.9 761,951 - EX28DRAFT_0765 0.79 -0.1 761,955 - EX28DRAFT_0765 0.79 +0.1 761,977 - EX28DRAFT_0765 0.81 -0.2 761,990 + EX28DRAFT_0765 0.82 -2.0 762,015 + EX28DRAFT_0765 0.83 -2.0 762,015 + EX28DRAFT_0765 0.83 +1.1 762,015 + EX28DRAFT_0765 0.83 -0.7 762,016 - EX28DRAFT_0765 0.83 -1.5 762,016 - EX28DRAFT_0765 0.83 -1.2 762,016 - EX28DRAFT_0765 0.83 -0.3 762,017 + EX28DRAFT_0765 0.83 +0.9 762,018 - EX28DRAFT_0765 0.83 -0.9 762,018 - EX28DRAFT_0765 0.83 -0.2 762,018 - EX28DRAFT_0765 0.83 -1.5 762,018 - EX28DRAFT_0765 0.83 +2.1 762,018 - EX28DRAFT_0765 0.83 +2.1 762,069 + EX28DRAFT_0765 0.87 -0.9 762,069 + EX28DRAFT_0765 0.87 +0.5 762,070 - EX28DRAFT_0765 0.87 -0.5 762,070 - EX28DRAFT_0765 0.87 -0.5 762,070 - EX28DRAFT_0765 0.87 +2.7 762,117 + +0.5 762,118 - +0.3 762,145 - -0.1 762,189 - +0.1 762,325 + +0.8 762,325 + -0.9 762,325 + -0.5 762,495 + -0.7 762,495 + -0.7 762,579 + +0.2 762,579 + +1.0 762,605 + -1.0 762,606 - -1.5 762,644 - -0.9 762,644 - -0.9 762,647 + +0.9 762,647 + +0.9 762,647 + +0.3 762,647 + -0.9 762,648 - -1.3 762,648 - +0.8 762,668 + +0.6 762,893 - EX28DRAFT_0766 0.23 -0.2 762,931 + EX28DRAFT_0766 0.26 -1.3 763,143 + EX28DRAFT_0766 0.42 +1.2 763,201 - EX28DRAFT_0766 0.47 -0.3 763,336 + EX28DRAFT_0766 0.57 -2.2 763,337 - EX28DRAFT_0766 0.57 -0.9 763,481 - EX28DRAFT_0766 0.68 -0.6 763,849 - -0.9 763,884 + -0.3 763,889 - -0.2 763,889 - +1.1 764,008 - EX28DRAFT_0767 0.10 +0.4 764,008 - EX28DRAFT_0767 0.10 +2.1 764,180 - EX28DRAFT_0767 0.26 +0.0 764,180 - EX28DRAFT_0767 0.26 -2.4 764,257 - EX28DRAFT_0767 0.33 -1.4 764,260 + EX28DRAFT_0767 0.34 -1.7 764,260 + EX28DRAFT_0767 0.34 +0.7 764,260 + EX28DRAFT_0767 0.34 -1.6 764,260 + EX28DRAFT_0767 0.34 +0.7 764,261 - EX28DRAFT_0767 0.34 -0.8 764,261 - EX28DRAFT_0767 0.34 -0.1 764,261 - EX28DRAFT_0767 0.34 +1.8 764,261 - EX28DRAFT_0767 0.34 -1.3 764,316 + EX28DRAFT_0767 0.39 -0.1 764,404 - EX28DRAFT_0767 0.47 -1.3 764,506 + EX28DRAFT_0767 0.57 -0.8 764,508 + EX28DRAFT_0767 0.57 -1.4 764,536 + EX28DRAFT_0767 0.59 -0.0 764,536 + EX28DRAFT_0767 0.59 -0.4 764,795 + EX28DRAFT_0767 0.84 -0.7 764,795 + EX28DRAFT_0767 0.84 -1.1 764,795 + EX28DRAFT_0767 0.84 -1.6 764,796 - EX28DRAFT_0767 0.84 -1.3 764,799 + EX28DRAFT_0767 0.84 +0.8 764,799 + EX28DRAFT_0767 0.84 -0.4 764,806 - EX28DRAFT_0767 0.85 -1.8
Or see this region's nucleotide sequence