Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0736

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0734 and EX28DRAFT_0735 overlap by 286 nucleotidesEX28DRAFT_0735 and EX28DRAFT_0736 are separated by 219 nucleotidesEX28DRAFT_0736 and EX28DRAFT_0737 are separated by 65 nucleotidesEX28DRAFT_0737 and EX28DRAFT_0738 overlap by 4 nucleotides EX28DRAFT_0734: EX28DRAFT_0734 - RNA, at 732,189 to 732,651 _0734 EX28DRAFT_0735: EX28DRAFT_0735 - Cold shock proteins, at 732,366 to 732,575 _0735 EX28DRAFT_0736: EX28DRAFT_0736 - Cell division protein FtsI/penicillin-binding protein 2, at 732,795 to 734,513 _0736 EX28DRAFT_0737: EX28DRAFT_0737 - Methyltransferase domain, at 734,579 to 735,394 _0737 EX28DRAFT_0738: EX28DRAFT_0738 - Predicted membrane protein, at 735,391 to 735,957 _0738 Position (kb) 732 733 734 735Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 731.992 kb on - strandat 732.078 kb on + strandat 732.079 kb on - strandat 732.161 kb on + strandat 732.161 kb on + strandat 732.208 kb on - strandat 732.280 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.286 kb on - strand, within EX28DRAFT_0734at 732.300 kb on + strand, within EX28DRAFT_0734at 732.377 kb on + strandat 732.389 kb on + strandat 732.457 kb on + strandat 732.569 kb on + strandat 732.602 kb on - strandat 732.621 kb on + strandat 732.659 kb on - strandat 732.670 kb on + strandat 732.692 kb on - strandat 732.695 kb on - strandat 732.860 kb on - strandat 732.864 kb on - strandat 732.947 kb on + strandat 732.948 kb on - strandat 732.994 kb on + strand, within EX28DRAFT_0736at 732.995 kb on - strand, within EX28DRAFT_0736at 733.058 kb on + strand, within EX28DRAFT_0736at 733.186 kb on - strand, within EX28DRAFT_0736at 733.463 kb on + strand, within EX28DRAFT_0736at 733.464 kb on - strand, within EX28DRAFT_0736at 733.464 kb on - strand, within EX28DRAFT_0736at 733.474 kb on + strand, within EX28DRAFT_0736at 733.474 kb on + strand, within EX28DRAFT_0736at 733.474 kb on + strand, within EX28DRAFT_0736at 733.475 kb on - strand, within EX28DRAFT_0736at 733.475 kb on - strand, within EX28DRAFT_0736at 733.569 kb on - strand, within EX28DRAFT_0736at 733.588 kb on + strand, within EX28DRAFT_0736at 733.588 kb on + strand, within EX28DRAFT_0736at 733.677 kb on - strand, within EX28DRAFT_0736at 733.677 kb on - strand, within EX28DRAFT_0736at 733.774 kb on - strand, within EX28DRAFT_0736at 733.776 kb on - strand, within EX28DRAFT_0736at 733.794 kb on - strand, within EX28DRAFT_0736at 733.809 kb on + strand, within EX28DRAFT_0736at 733.823 kb on + strand, within EX28DRAFT_0736at 733.907 kb on + strand, within EX28DRAFT_0736at 733.990 kb on - strand, within EX28DRAFT_0736at 734.068 kb on - strand, within EX28DRAFT_0736at 734.068 kb on - strand, within EX28DRAFT_0736at 734.293 kb on - strand, within EX28DRAFT_0736at 734.304 kb on + strand, within EX28DRAFT_0736at 734.304 kb on + strand, within EX28DRAFT_0736at 734.313 kb on + strand, within EX28DRAFT_0736at 734.391 kb on + strandat 734.392 kb on - strandat 734.523 kb on + strandat 734.525 kb on + strandat 734.544 kb on + strandat 734.626 kb on + strandat 734.627 kb on - strandat 734.634 kb on - strandat 734.635 kb on + strandat 734.636 kb on - strandat 734.636 kb on - strandat 734.705 kb on - strand, within EX28DRAFT_0737at 734.778 kb on - strand, within EX28DRAFT_0737at 734.871 kb on - strand, within EX28DRAFT_0737at 734.871 kb on - strand, within EX28DRAFT_0737at 734.873 kb on + strand, within EX28DRAFT_0737at 734.873 kb on + strand, within EX28DRAFT_0737at 735.158 kb on + strand, within EX28DRAFT_0737at 735.159 kb on - strand, within EX28DRAFT_0737at 735.334 kb on - strandat 735.334 kb on - strandat 735.342 kb on + strandat 735.343 kb on - strandat 735.343 kb on - strandat 735.497 kb on - strand, within EX28DRAFT_0738

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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731,992 - -2.7
732,078 + -1.0
732,079 - +1.5
732,161 + +2.6
732,161 + +2.3
732,208 - +2.1
732,280 + EX28DRAFT_0734 0.20 +2.5
732,282 + EX28DRAFT_0734 0.20 +2.4
732,282 + EX28DRAFT_0734 0.20 +2.0
732,282 + EX28DRAFT_0734 0.20 +2.1
732,282 + EX28DRAFT_0734 0.20 -0.4
732,282 + EX28DRAFT_0734 0.20 +2.4
732,286 - EX28DRAFT_0734 0.21 -1.4
732,300 + EX28DRAFT_0734 0.24 +3.3
732,377 + +2.9
732,389 + -0.5
732,457 + +4.2
732,569 + +3.6
732,602 - +1.5
732,621 + +4.5
732,659 - +0.9
732,670 + -0.3
732,692 - +0.4
732,695 - -0.6
732,860 - -1.6
732,864 - +0.6
732,947 + +0.8
732,948 - -0.5
732,994 + EX28DRAFT_0736 0.12 -1.1
732,995 - EX28DRAFT_0736 0.12 +1.2
733,058 + EX28DRAFT_0736 0.15 +0.9
733,186 - EX28DRAFT_0736 0.23 -0.2
733,463 + EX28DRAFT_0736 0.39 -1.4
733,464 - EX28DRAFT_0736 0.39 -1.5
733,464 - EX28DRAFT_0736 0.39 +0.3
733,474 + EX28DRAFT_0736 0.39 -1.0
733,474 + EX28DRAFT_0736 0.39 -2.0
733,474 + EX28DRAFT_0736 0.39 +0.0
733,475 - EX28DRAFT_0736 0.40 +3.0
733,475 - EX28DRAFT_0736 0.40 -1.1
733,569 - EX28DRAFT_0736 0.45 +2.4
733,588 + EX28DRAFT_0736 0.46 +0.9
733,588 + EX28DRAFT_0736 0.46 -1.3
733,677 - EX28DRAFT_0736 0.51 -0.3
733,677 - EX28DRAFT_0736 0.51 -1.0
733,774 - EX28DRAFT_0736 0.57 -0.6
733,776 - EX28DRAFT_0736 0.57 -0.0
733,794 - EX28DRAFT_0736 0.58 +0.8
733,809 + EX28DRAFT_0736 0.59 -0.1
733,823 + EX28DRAFT_0736 0.60 +0.4
733,907 + EX28DRAFT_0736 0.65 -0.4
733,990 - EX28DRAFT_0736 0.70 -1.0
734,068 - EX28DRAFT_0736 0.74 -0.1
734,068 - EX28DRAFT_0736 0.74 +1.4
734,293 - EX28DRAFT_0736 0.87 +1.8
734,304 + EX28DRAFT_0736 0.88 +0.6
734,304 + EX28DRAFT_0736 0.88 -1.4
734,313 + EX28DRAFT_0736 0.88 -0.3
734,391 + -0.4
734,392 - +0.8
734,523 + -0.5
734,525 + +0.7
734,544 + +1.1
734,626 + -0.5
734,627 - -3.0
734,634 - +0.2
734,635 + +2.2
734,636 - -0.2
734,636 - +1.4
734,705 - EX28DRAFT_0737 0.15 -1.6
734,778 - EX28DRAFT_0737 0.24 -1.3
734,871 - EX28DRAFT_0737 0.36 -1.0
734,871 - EX28DRAFT_0737 0.36 -0.4
734,873 + EX28DRAFT_0737 0.36 -1.4
734,873 + EX28DRAFT_0737 0.36 +0.3
735,158 + EX28DRAFT_0737 0.71 -1.2
735,159 - EX28DRAFT_0737 0.71 -0.1
735,334 - +1.6
735,334 - -0.3
735,342 + +0.5
735,343 - -0.0
735,343 - -0.2
735,497 - EX28DRAFT_0738 0.19 -0.2

Or see this region's nucleotide sequence