Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0699 and EX28DRAFT_0700 are separated by 15 nucleotides EX28DRAFT_0700 and EX28DRAFT_0701 are separated by 121 nucleotides
EX28DRAFT_0699: EX28DRAFT_0699 - ABC-type Zn2+ transport system, periplasmic component/surface adhesin, at 695,656 to 696,615
_0699
EX28DRAFT_0700: EX28DRAFT_0700 - Membrane proteins related to metalloendopeptidases, at 696,631 to 697,950
_0700
EX28DRAFT_0701: EX28DRAFT_0701 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase, at 698,072 to 699,043
_0701
Position (kb) 696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 695.675 kb on + strand at 695.724 kb on + strand at 695.900 kb on + strand, within EX28DRAFT_0699 at 695.900 kb on + strand, within EX28DRAFT_0699 at 696.101 kb on - strand, within EX28DRAFT_0699 at 696.101 kb on - strand, within EX28DRAFT_0699 at 696.131 kb on + strand, within EX28DRAFT_0699 at 696.200 kb on + strand, within EX28DRAFT_0699 at 696.233 kb on + strand, within EX28DRAFT_0699 at 696.283 kb on - strand, within EX28DRAFT_0699 at 696.557 kb on - strand at 696.628 kb on + strand at 696.629 kb on - strand at 696.666 kb on + strand at 696.746 kb on - strand at 696.752 kb on - strand at 696.922 kb on + strand, within EX28DRAFT_0700 at 696.922 kb on + strand, within EX28DRAFT_0700 at 696.922 kb on + strand, within EX28DRAFT_0700 at 696.923 kb on - strand, within EX28DRAFT_0700 at 696.985 kb on - strand, within EX28DRAFT_0700 at 697.666 kb on + strand, within EX28DRAFT_0700 at 697.677 kb on - strand, within EX28DRAFT_0700 at 697.690 kb on - strand, within EX28DRAFT_0700 at 697.690 kb on - strand, within EX28DRAFT_0700 at 697.693 kb on + strand, within EX28DRAFT_0700 at 697.694 kb on - strand, within EX28DRAFT_0700 at 697.695 kb on + strand, within EX28DRAFT_0700 at 697.696 kb on - strand, within EX28DRAFT_0700 at 697.705 kb on + strand, within EX28DRAFT_0700 at 697.708 kb on - strand, within EX28DRAFT_0700 at 697.719 kb on + strand, within EX28DRAFT_0700 at 697.720 kb on - strand, within EX28DRAFT_0700 at 697.720 kb on - strand, within EX28DRAFT_0700 at 697.813 kb on + strand, within EX28DRAFT_0700 at 697.814 kb on - strand, within EX28DRAFT_0700 at 697.887 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 698.031 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 695,675 + -0.3 695,724 + -0.3 695,900 + EX28DRAFT_0699 0.25 -0.2 695,900 + EX28DRAFT_0699 0.25 +0.1 696,101 - EX28DRAFT_0699 0.46 +1.1 696,101 - EX28DRAFT_0699 0.46 +0.3 696,131 + EX28DRAFT_0699 0.49 +2.0 696,200 + EX28DRAFT_0699 0.57 -0.8 696,233 + EX28DRAFT_0699 0.60 +0.2 696,283 - EX28DRAFT_0699 0.65 -0.5 696,557 - +1.5 696,628 + +1.9 696,629 - -0.9 696,666 + +0.6 696,746 - -1.2 696,752 - +0.0 696,922 + EX28DRAFT_0700 0.22 +4.6 696,922 + EX28DRAFT_0700 0.22 -0.8 696,922 + EX28DRAFT_0700 0.22 +5.0 696,923 - EX28DRAFT_0700 0.22 +3.6 696,985 - EX28DRAFT_0700 0.27 -0.4 697,666 + EX28DRAFT_0700 0.78 -3.7 697,677 - EX28DRAFT_0700 0.79 +1.1 697,690 - EX28DRAFT_0700 0.80 -1.4 697,690 - EX28DRAFT_0700 0.80 +0.5 697,693 + EX28DRAFT_0700 0.80 -0.0 697,694 - EX28DRAFT_0700 0.81 -0.3 697,695 + EX28DRAFT_0700 0.81 -0.1 697,696 - EX28DRAFT_0700 0.81 -2.0 697,705 + EX28DRAFT_0700 0.81 -0.2 697,708 - EX28DRAFT_0700 0.82 +0.9 697,719 + EX28DRAFT_0700 0.82 +0.5 697,720 - EX28DRAFT_0700 0.82 +1.1 697,720 - EX28DRAFT_0700 0.82 +1.4 697,813 + EX28DRAFT_0700 0.90 +0.5 697,814 - EX28DRAFT_0700 0.90 +0.6 697,887 + -0.9 697,948 + -0.1 697,948 + +0.4 698,031 + +0.5
Or see this region's nucleotide sequence