Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0660 and EX28DRAFT_0661 overlap by 4 nucleotides EX28DRAFT_0661 and EX28DRAFT_0662 are separated by 4 nucleotides
EX28DRAFT_0660: EX28DRAFT_0660 - flagellar motor stator protein MotA, at 654,207 to 655,094
_0660
EX28DRAFT_0661: EX28DRAFT_0661 - Flagellar motor protein, at 655,091 to 656,020
_0661
EX28DRAFT_0662: EX28DRAFT_0662 - Chemotaxis protein histidine kinase and related kinases, at 656,025 to 658,061
_0662
Position (kb) 655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 654.123 kb on + strand at 654.123 kb on + strand at 654.182 kb on + strand at 654.213 kb on - strand at 654.213 kb on - strand at 654.218 kb on - strand at 654.220 kb on + strand at 654.220 kb on + strand at 654.220 kb on + strand at 654.221 kb on - strand at 654.221 kb on - strand at 654.232 kb on + strand at 654.232 kb on + strand at 654.258 kb on + strand at 654.291 kb on + strand at 654.292 kb on - strand at 654.292 kb on - strand at 654.308 kb on + strand, within EX28DRAFT_0660 at 654.309 kb on - strand, within EX28DRAFT_0660 at 654.309 kb on - strand, within EX28DRAFT_0660 at 654.311 kb on + strand, within EX28DRAFT_0660 at 654.342 kb on - strand, within EX28DRAFT_0660 at 654.359 kb on + strand, within EX28DRAFT_0660 at 654.360 kb on - strand, within EX28DRAFT_0660 at 654.414 kb on + strand, within EX28DRAFT_0660 at 654.414 kb on + strand, within EX28DRAFT_0660 at 654.425 kb on + strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.431 kb on + strand, within EX28DRAFT_0660 at 654.431 kb on + strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.510 kb on + strand, within EX28DRAFT_0660 at 654.544 kb on - strand, within EX28DRAFT_0660 at 654.623 kb on + strand, within EX28DRAFT_0660 at 654.624 kb on - strand, within EX28DRAFT_0660 at 654.624 kb on - strand, within EX28DRAFT_0660 at 654.843 kb on - strand, within EX28DRAFT_0660 at 654.992 kb on + strand, within EX28DRAFT_0660 at 655.192 kb on + strand, within EX28DRAFT_0661 at 655.275 kb on - strand, within EX28DRAFT_0661 at 655.604 kb on + strand, within EX28DRAFT_0661 at 655.774 kb on - strand, within EX28DRAFT_0661 at 655.881 kb on + strand, within EX28DRAFT_0661 at 656.037 kb on - strand at 656.171 kb on + strand at 656.173 kb on + strand at 656.174 kb on - strand at 656.174 kb on - strand at 656.202 kb on - strand at 656.202 kb on - strand at 656.228 kb on - strand at 656.286 kb on - strand, within EX28DRAFT_0662 at 656.286 kb on - strand, within EX28DRAFT_0662 at 656.312 kb on + strand, within EX28DRAFT_0662 at 656.313 kb on - strand, within EX28DRAFT_0662 at 656.314 kb on + strand, within EX28DRAFT_0662 at 656.315 kb on + strand, within EX28DRAFT_0662 at 656.339 kb on + strand, within EX28DRAFT_0662 at 656.340 kb on - strand, within EX28DRAFT_0662 at 656.376 kb on + strand, within EX28DRAFT_0662 at 656.377 kb on - strand, within EX28DRAFT_0662 at 656.594 kb on - strand, within EX28DRAFT_0662
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 654,123 + -1.0 654,123 + -1.4 654,182 + -0.4 654,213 - +0.4 654,213 - -1.3 654,218 - -0.3 654,220 + -1.8 654,220 + -0.8 654,220 + -1.1 654,221 - -1.4 654,221 - +0.6 654,232 + -0.9 654,232 + -0.9 654,258 + -0.1 654,291 + +0.4 654,292 - -0.3 654,292 - -0.8 654,308 + EX28DRAFT_0660 0.11 -0.6 654,309 - EX28DRAFT_0660 0.11 +0.2 654,309 - EX28DRAFT_0660 0.11 -1.0 654,311 + EX28DRAFT_0660 0.12 +0.2 654,342 - EX28DRAFT_0660 0.15 -0.5 654,359 + EX28DRAFT_0660 0.17 -0.6 654,360 - EX28DRAFT_0660 0.17 -0.9 654,414 + EX28DRAFT_0660 0.23 +0.1 654,414 + EX28DRAFT_0660 0.23 -1.4 654,425 + EX28DRAFT_0660 0.25 -1.2 654,426 - EX28DRAFT_0660 0.25 -1.4 654,426 - EX28DRAFT_0660 0.25 +0.3 654,426 - EX28DRAFT_0660 0.25 -2.2 654,426 - EX28DRAFT_0660 0.25 +0.8 654,426 - EX28DRAFT_0660 0.25 -0.2 654,429 + EX28DRAFT_0660 0.25 -2.9 654,429 + EX28DRAFT_0660 0.25 +0.6 654,429 + EX28DRAFT_0660 0.25 -0.6 654,429 + EX28DRAFT_0660 0.25 -1.8 654,430 - EX28DRAFT_0660 0.25 -1.1 654,430 - EX28DRAFT_0660 0.25 -0.5 654,430 - EX28DRAFT_0660 0.25 -3.0 654,430 - EX28DRAFT_0660 0.25 -1.3 654,431 + EX28DRAFT_0660 0.25 +1.5 654,431 + EX28DRAFT_0660 0.25 +3.6 654,432 - EX28DRAFT_0660 0.25 +0.1 654,432 - EX28DRAFT_0660 0.25 -1.7 654,432 - EX28DRAFT_0660 0.25 -0.1 654,432 - EX28DRAFT_0660 0.25 -0.3 654,510 + EX28DRAFT_0660 0.34 +2.8 654,544 - EX28DRAFT_0660 0.38 -0.3 654,623 + EX28DRAFT_0660 0.47 -1.3 654,624 - EX28DRAFT_0660 0.47 -2.5 654,624 - EX28DRAFT_0660 0.47 -0.2 654,843 - EX28DRAFT_0660 0.72 -1.2 654,992 + EX28DRAFT_0660 0.88 -0.9 655,192 + EX28DRAFT_0661 0.11 -1.9 655,275 - EX28DRAFT_0661 0.20 -1.5 655,604 + EX28DRAFT_0661 0.55 -1.9 655,774 - EX28DRAFT_0661 0.73 -1.2 655,881 + EX28DRAFT_0661 0.85 -1.4 656,037 - -1.6 656,171 + -1.8 656,173 + -0.2 656,174 - -0.2 656,174 - +1.6 656,202 - -1.2 656,202 - -0.7 656,228 - -0.9 656,286 - EX28DRAFT_0662 0.13 -2.4 656,286 - EX28DRAFT_0662 0.13 +1.2 656,312 + EX28DRAFT_0662 0.14 -1.1 656,313 - EX28DRAFT_0662 0.14 +0.1 656,314 + EX28DRAFT_0662 0.14 -0.2 656,315 + EX28DRAFT_0662 0.14 -0.2 656,339 + EX28DRAFT_0662 0.15 -0.7 656,340 - EX28DRAFT_0662 0.15 -1.8 656,376 + EX28DRAFT_0662 0.17 -0.1 656,377 - EX28DRAFT_0662 0.17 +0.0 656,594 - EX28DRAFT_0662 0.28 -0.2
Or see this region's nucleotide sequence