Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0616 and EX28DRAFT_0617 are separated by 228 nucleotides EX28DRAFT_0617 and EX28DRAFT_0618 are separated by 74 nucleotides EX28DRAFT_0618 and EX28DRAFT_0619 are separated by 102 nucleotides
EX28DRAFT_0616: EX28DRAFT_0616 - flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF), at 613,756 to 615,432
_0616
EX28DRAFT_0617: EX28DRAFT_0617 - flagellar hook-basal body complex protein FliE, at 615,661 to 615,975
_0617
EX28DRAFT_0618: EX28DRAFT_0618 - YedD-like protein, at 616,050 to 616,463
_0618
EX28DRAFT_0619: EX28DRAFT_0619 - Glycosidases, at 616,566 to 618,056
_0619
Position (kb) 616
617 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 615.159 kb on + strand, within EX28DRAFT_0616 at 615.159 kb on + strand, within EX28DRAFT_0616 at 615.159 kb on + strand, within EX28DRAFT_0616 at 615.160 kb on - strand, within EX28DRAFT_0616 at 615.160 kb on - strand, within EX28DRAFT_0616 at 615.160 kb on - strand, within EX28DRAFT_0616 at 615.160 kb on - strand, within EX28DRAFT_0616 at 615.313 kb on + strand at 615.313 kb on + strand at 615.399 kb on + strand at 615.445 kb on - strand at 615.445 kb on - strand at 615.459 kb on + strand at 615.459 kb on + strand at 615.459 kb on + strand at 615.460 kb on - strand at 615.460 kb on - strand at 615.460 kb on - strand at 615.561 kb on + strand at 615.572 kb on + strand at 615.591 kb on + strand at 615.592 kb on - strand at 615.592 kb on - strand at 615.595 kb on + strand at 615.604 kb on + strand at 615.610 kb on - strand at 615.623 kb on + strand at 615.624 kb on - strand at 615.638 kb on - strand at 615.666 kb on + strand at 615.667 kb on - strand at 615.669 kb on - strand at 615.946 kb on + strand at 616.113 kb on + strand, within EX28DRAFT_0618 at 616.113 kb on + strand, within EX28DRAFT_0618 at 616.113 kb on + strand, within EX28DRAFT_0618 at 616.113 kb on + strand, within EX28DRAFT_0618 at 616.114 kb on - strand, within EX28DRAFT_0618 at 616.309 kb on - strand, within EX28DRAFT_0618 at 616.309 kb on - strand, within EX28DRAFT_0618 at 616.338 kb on + strand, within EX28DRAFT_0618 at 616.451 kb on + strand at 616.467 kb on + strand at 616.567 kb on + strand at 616.568 kb on - strand at 616.568 kb on - strand at 616.568 kb on - strand at 616.616 kb on + strand at 616.697 kb on - strand at 616.930 kb on + strand, within EX28DRAFT_0619 at 617.137 kb on + strand, within EX28DRAFT_0619 at 617.224 kb on + strand, within EX28DRAFT_0619 at 617.224 kb on + strand, within EX28DRAFT_0619 at 617.224 kb on + strand, within EX28DRAFT_0619 at 617.225 kb on - strand, within EX28DRAFT_0619 at 617.225 kb on - strand, within EX28DRAFT_0619 at 617.238 kb on - strand, within EX28DRAFT_0619 at 617.271 kb on - strand, within EX28DRAFT_0619 at 617.401 kb on + strand, within EX28DRAFT_0619 at 617.402 kb on - strand, within EX28DRAFT_0619 at 617.459 kb on - strand, within EX28DRAFT_0619 at 617.459 kb on - strand, within EX28DRAFT_0619
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 615,159 + EX28DRAFT_0616 0.84 +1.1 615,159 + EX28DRAFT_0616 0.84 -1.2 615,159 + EX28DRAFT_0616 0.84 -1.1 615,160 - EX28DRAFT_0616 0.84 -0.7 615,160 - EX28DRAFT_0616 0.84 -1.9 615,160 - EX28DRAFT_0616 0.84 +1.4 615,160 - EX28DRAFT_0616 0.84 -1.0 615,313 + -0.2 615,313 + -1.7 615,399 + -1.0 615,445 - -1.6 615,445 - -0.9 615,459 + -0.1 615,459 + -1.5 615,459 + -1.6 615,460 - -2.1 615,460 - -0.1 615,460 - -1.2 615,561 + -0.3 615,572 + -1.2 615,591 + -1.3 615,592 - -0.3 615,592 - -2.2 615,595 + +0.2 615,604 + -0.1 615,610 - -1.1 615,623 + -1.1 615,624 - -2.0 615,638 - -1.5 615,666 + -0.9 615,667 - -1.4 615,669 - -1.3 615,946 + -0.3 616,113 + EX28DRAFT_0618 0.15 -1.6 616,113 + EX28DRAFT_0618 0.15 -0.3 616,113 + EX28DRAFT_0618 0.15 -1.9 616,113 + EX28DRAFT_0618 0.15 -0.4 616,114 - EX28DRAFT_0618 0.15 -0.6 616,309 - EX28DRAFT_0618 0.63 -1.0 616,309 - EX28DRAFT_0618 0.63 -1.0 616,338 + EX28DRAFT_0618 0.70 +0.1 616,451 + +0.4 616,467 + -0.2 616,567 + +2.0 616,568 - -2.7 616,568 - +0.4 616,568 - -2.0 616,616 + -0.3 616,697 - +0.1 616,930 + EX28DRAFT_0619 0.24 -0.3 617,137 + EX28DRAFT_0619 0.38 +1.0 617,224 + EX28DRAFT_0619 0.44 +0.3 617,224 + EX28DRAFT_0619 0.44 +0.1 617,224 + EX28DRAFT_0619 0.44 +3.2 617,225 - EX28DRAFT_0619 0.44 +1.5 617,225 - EX28DRAFT_0619 0.44 -0.6 617,238 - EX28DRAFT_0619 0.45 -1.2 617,271 - EX28DRAFT_0619 0.47 +0.5 617,401 + EX28DRAFT_0619 0.56 +1.2 617,402 - EX28DRAFT_0619 0.56 +1.5 617,459 - EX28DRAFT_0619 0.60 -0.2 617,459 - EX28DRAFT_0619 0.60 +0.1
Or see this region's nucleotide sequence