Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0569 and EX28DRAFT_0570 are separated by 141 nucleotides EX28DRAFT_0570 and EX28DRAFT_0571 are separated by 54 nucleotides EX28DRAFT_0571 and EX28DRAFT_0572 are separated by 164 nucleotides EX28DRAFT_0572 and EX28DRAFT_0573 are separated by 26 nucleotides
EX28DRAFT_0569: EX28DRAFT_0569 - Transcriptional regulator, at 565,920 to 566,840
_0569
EX28DRAFT_0570: EX28DRAFT_0570 - Putative translation initiation inhibitor, yjgF family, at 566,982 to 567,383
_0570
EX28DRAFT_0571: EX28DRAFT_0571 - tRNA, at 567,438 to 567,513
_0571
EX28DRAFT_0572: EX28DRAFT_0572 - TonB-dependent siderophore receptor, at 567,678 to 569,867
_0572
EX28DRAFT_0573: EX28DRAFT_0573 - Lysine/ornithine N-monooxygenase, at 569,894 to 571,219
_0573
Position (kb) 567
568
569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 566.732 kb on + strand, within EX28DRAFT_0569 at 566.759 kb on + strand at 566.759 kb on + strand at 566.759 kb on + strand at 566.760 kb on - strand at 566.760 kb on - strand at 566.876 kb on + strand at 566.939 kb on + strand at 566.939 kb on + strand at 566.940 kb on - strand at 566.975 kb on + strand at 567.027 kb on + strand, within EX28DRAFT_0570 at 567.173 kb on + strand, within EX28DRAFT_0570 at 567.202 kb on + strand, within EX28DRAFT_0570 at 567.202 kb on + strand, within EX28DRAFT_0570 at 567.203 kb on - strand, within EX28DRAFT_0570 at 567.252 kb on - strand, within EX28DRAFT_0570 at 567.292 kb on - strand, within EX28DRAFT_0570 at 567.327 kb on + strand, within EX28DRAFT_0570 at 567.639 kb on + strand at 567.695 kb on - strand at 567.727 kb on + strand at 567.727 kb on + strand at 567.728 kb on - strand at 567.732 kb on - strand at 567.800 kb on - strand at 567.881 kb on + strand at 568.102 kb on + strand, within EX28DRAFT_0572 at 568.208 kb on - strand, within EX28DRAFT_0572 at 568.346 kb on - strand, within EX28DRAFT_0572 at 568.573 kb on + strand, within EX28DRAFT_0572 at 568.619 kb on - strand, within EX28DRAFT_0572 at 568.658 kb on - strand, within EX28DRAFT_0572 at 568.791 kb on + strand, within EX28DRAFT_0572 at 568.906 kb on + strand, within EX28DRAFT_0572 at 568.907 kb on - strand, within EX28DRAFT_0572 at 568.907 kb on - strand, within EX28DRAFT_0572 at 569.041 kb on + strand, within EX28DRAFT_0572 at 569.120 kb on - strand, within EX28DRAFT_0572 at 569.123 kb on - strand, within EX28DRAFT_0572 at 569.778 kb on - strand at 569.871 kb on + strand at 569.871 kb on + strand at 569.872 kb on - strand at 569.872 kb on - strand at 570.179 kb on - strand, within EX28DRAFT_0573 at 570.397 kb on - strand, within EX28DRAFT_0573 at 570.528 kb on + strand, within EX28DRAFT_0573 at 570.564 kb on + strand, within EX28DRAFT_0573 at 570.568 kb on + strand, within EX28DRAFT_0573 at 570.626 kb on - strand, within EX28DRAFT_0573 at 570.731 kb on - strand, within EX28DRAFT_0573 at 570.845 kb on - strand, within EX28DRAFT_0573
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 566,732 + EX28DRAFT_0569 0.88 +0.3 566,759 + +2.2 566,759 + +0.7 566,759 + +0.5 566,760 - +1.5 566,760 - +2.8 566,876 + -0.1 566,939 + +1.9 566,939 + -0.2 566,940 - -3.3 566,975 + +0.3 567,027 + EX28DRAFT_0570 0.11 +1.4 567,173 + EX28DRAFT_0570 0.48 +6.7 567,202 + EX28DRAFT_0570 0.55 +1.6 567,202 + EX28DRAFT_0570 0.55 -0.8 567,203 - EX28DRAFT_0570 0.55 +0.3 567,252 - EX28DRAFT_0570 0.67 -1.3 567,292 - EX28DRAFT_0570 0.77 +0.4 567,327 + EX28DRAFT_0570 0.86 +1.2 567,639 + -0.3 567,695 - +0.0 567,727 + -3.2 567,727 + +3.4 567,728 - -1.3 567,732 - -1.2 567,800 - -1.3 567,881 + +0.2 568,102 + EX28DRAFT_0572 0.19 -0.6 568,208 - EX28DRAFT_0572 0.24 +0.2 568,346 - EX28DRAFT_0572 0.31 -1.2 568,573 + EX28DRAFT_0572 0.41 +2.3 568,619 - EX28DRAFT_0572 0.43 +1.0 568,658 - EX28DRAFT_0572 0.45 +0.0 568,791 + EX28DRAFT_0572 0.51 +1.6 568,906 + EX28DRAFT_0572 0.56 -0.9 568,907 - EX28DRAFT_0572 0.56 +0.0 568,907 - EX28DRAFT_0572 0.56 +0.0 569,041 + EX28DRAFT_0572 0.62 -0.5 569,120 - EX28DRAFT_0572 0.66 +0.7 569,123 - EX28DRAFT_0572 0.66 -0.2 569,778 - -1.4 569,871 + +1.0 569,871 + -0.5 569,872 - -0.4 569,872 - +0.5 570,179 - EX28DRAFT_0573 0.21 -0.8 570,397 - EX28DRAFT_0573 0.38 +0.4 570,528 + EX28DRAFT_0573 0.48 +0.3 570,564 + EX28DRAFT_0573 0.51 -0.3 570,568 + EX28DRAFT_0573 0.51 +3.8 570,626 - EX28DRAFT_0573 0.55 -0.8 570,731 - EX28DRAFT_0573 0.63 +0.4 570,845 - EX28DRAFT_0573 0.72 -0.5
Or see this region's nucleotide sequence