Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0545 and EX28DRAFT_0546 are separated by 210 nucleotides EX28DRAFT_0546 and EX28DRAFT_0547 are separated by 119 nucleotides EX28DRAFT_0547 and EX28DRAFT_0548 are separated by 92 nucleotides
EX28DRAFT_0545: EX28DRAFT_0545 - Exodeoxyribonuclease I subunit C (EC 3.1.11.1), at 539,030 to 540,454
_0545
EX28DRAFT_0546: EX28DRAFT_0546 - D-alanyl-D-alanine carboxypeptidase, at 540,665 to 541,831
_0546
EX28DRAFT_0547: EX28DRAFT_0547 - DNA gyrase inhibitor, at 541,951 to 542,424
_0547
EX28DRAFT_0548: EX28DRAFT_0548 - Predicted membrane protein, at 542,517 to 543,575
_0548
Position (kb) 540
541
542 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 539.731 kb on + strand, within EX28DRAFT_0545 at 540.462 kb on - strand at 540.489 kb on - strand at 540.489 kb on - strand at 540.493 kb on + strand at 540.597 kb on - strand at 540.597 kb on - strand at 540.660 kb on + strand at 540.660 kb on + strand at 540.660 kb on + strand at 540.661 kb on - strand at 540.661 kb on - strand at 540.841 kb on + strand, within EX28DRAFT_0546 at 540.875 kb on + strand, within EX28DRAFT_0546 at 540.876 kb on - strand, within EX28DRAFT_0546 at 541.259 kb on + strand, within EX28DRAFT_0546 at 541.259 kb on + strand, within EX28DRAFT_0546 at 541.264 kb on + strand, within EX28DRAFT_0546 at 541.264 kb on + strand, within EX28DRAFT_0546 at 541.264 kb on + strand, within EX28DRAFT_0546 at 541.265 kb on - strand, within EX28DRAFT_0546 at 541.265 kb on - strand, within EX28DRAFT_0546 at 541.265 kb on - strand, within EX28DRAFT_0546 at 541.265 kb on - strand, within EX28DRAFT_0546 at 541.268 kb on + strand, within EX28DRAFT_0546 at 541.268 kb on + strand, within EX28DRAFT_0546 at 541.268 kb on + strand, within EX28DRAFT_0546 at 541.269 kb on - strand, within EX28DRAFT_0546 at 541.271 kb on - strand, within EX28DRAFT_0546 at 541.333 kb on + strand, within EX28DRAFT_0546 at 541.369 kb on + strand, within EX28DRAFT_0546 at 541.369 kb on + strand, within EX28DRAFT_0546 at 541.370 kb on - strand, within EX28DRAFT_0546 at 541.514 kb on - strand, within EX28DRAFT_0546 at 541.558 kb on + strand, within EX28DRAFT_0546 at 541.724 kb on + strand at 541.725 kb on - strand at 541.725 kb on - strand at 541.830 kb on - strand at 541.873 kb on + strand at 541.873 kb on + strand at 541.873 kb on + strand at 541.874 kb on - strand at 541.958 kb on - strand at 541.983 kb on + strand at 541.984 kb on - strand at 541.984 kb on - strand at 542.105 kb on - strand, within EX28DRAFT_0547 at 542.105 kb on - strand, within EX28DRAFT_0547 at 542.293 kb on - strand, within EX28DRAFT_0547 at 542.293 kb on - strand, within EX28DRAFT_0547 at 542.313 kb on + strand, within EX28DRAFT_0547 at 542.313 kb on + strand, within EX28DRAFT_0547 at 542.313 kb on + strand, within EX28DRAFT_0547 at 542.314 kb on - strand, within EX28DRAFT_0547 at 542.318 kb on - strand, within EX28DRAFT_0547 at 542.395 kb on + strand at 542.395 kb on + strand at 542.395 kb on + strand at 542.395 kb on + strand at 542.396 kb on - strand at 542.396 kb on - strand at 542.412 kb on + strand at 542.413 kb on - strand at 542.501 kb on + strand at 542.537 kb on - strand at 542.559 kb on + strand at 542.560 kb on - strand at 542.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 539,731 + EX28DRAFT_0545 0.49 -1.8 540,462 - -0.7 540,489 - -1.6 540,489 - +0.2 540,493 + +0.8 540,597 - -1.3 540,597 - -0.6 540,660 + +1.5 540,660 + +0.5 540,660 + +0.1 540,661 - +0.5 540,661 - -0.2 540,841 + EX28DRAFT_0546 0.15 -0.2 540,875 + EX28DRAFT_0546 0.18 -1.0 540,876 - EX28DRAFT_0546 0.18 +0.8 541,259 + EX28DRAFT_0546 0.51 -0.4 541,259 + EX28DRAFT_0546 0.51 -2.2 541,264 + EX28DRAFT_0546 0.51 +0.4 541,264 + EX28DRAFT_0546 0.51 +0.3 541,264 + EX28DRAFT_0546 0.51 -0.8 541,265 - EX28DRAFT_0546 0.51 +1.0 541,265 - EX28DRAFT_0546 0.51 +1.0 541,265 - EX28DRAFT_0546 0.51 +5.9 541,265 - EX28DRAFT_0546 0.51 +4.9 541,268 + EX28DRAFT_0546 0.52 -0.6 541,268 + EX28DRAFT_0546 0.52 -0.3 541,268 + EX28DRAFT_0546 0.52 -1.0 541,269 - EX28DRAFT_0546 0.52 +3.2 541,271 - EX28DRAFT_0546 0.52 +0.4 541,333 + EX28DRAFT_0546 0.57 -0.1 541,369 + EX28DRAFT_0546 0.60 +0.3 541,369 + EX28DRAFT_0546 0.60 +0.1 541,370 - EX28DRAFT_0546 0.60 +1.8 541,514 - EX28DRAFT_0546 0.73 +0.6 541,558 + EX28DRAFT_0546 0.77 +1.4 541,724 + +0.5 541,725 - +1.7 541,725 - +0.2 541,830 - -0.8 541,873 + +0.0 541,873 + +1.3 541,873 + +0.6 541,874 - -0.9 541,958 - -0.4 541,983 + -0.3 541,984 - +0.7 541,984 - -0.7 542,105 - EX28DRAFT_0547 0.32 +0.4 542,105 - EX28DRAFT_0547 0.32 +1.5 542,293 - EX28DRAFT_0547 0.72 -0.5 542,293 - EX28DRAFT_0547 0.72 -0.7 542,313 + EX28DRAFT_0547 0.76 +0.1 542,313 + EX28DRAFT_0547 0.76 +0.9 542,313 + EX28DRAFT_0547 0.76 +0.8 542,314 - EX28DRAFT_0547 0.77 -0.3 542,318 - EX28DRAFT_0547 0.77 +2.1 542,395 + +1.2 542,395 + -1.1 542,395 + -0.1 542,395 + +1.7 542,396 - -1.1 542,396 - -4.2 542,412 + +0.1 542,413 - -0.7 542,501 + -0.1 542,537 - -1.6 542,559 + +1.5 542,560 - +0.4 542,620 + +1.2
Or see this region's nucleotide sequence