Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0499 and EX28DRAFT_0500 are separated by 16 nucleotides EX28DRAFT_0500 and EX28DRAFT_0501 are separated by 15 nucleotides EX28DRAFT_0501 and EX28DRAFT_0502 are separated by 24 nucleotides
EX28DRAFT_0499: EX28DRAFT_0499 - putative colanic acid polymerase WcaD, at 490,894 to 492,114
_0499
EX28DRAFT_0500: EX28DRAFT_0500 - colanic acid biosynthesis glycosyl transferase WcaE, at 492,131 to 492,877
_0500
EX28DRAFT_0501: EX28DRAFT_0501 - colanic acid biosynthesis acetyltransferase WcaF, at 492,893 to 493,441
_0501
EX28DRAFT_0502: EX28DRAFT_0502 - GDP-mannose 4,6-dehydratase, at 493,466 to 494,587
_0502
Position (kb) 492
493 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 491.272 kb on - strand, within EX28DRAFT_0499 at 491.790 kb on - strand, within EX28DRAFT_0499 at 491.790 kb on - strand, within EX28DRAFT_0499 at 491.815 kb on + strand, within EX28DRAFT_0499 at 492.103 kb on - strand at 492.103 kb on - strand at 492.130 kb on + strand at 492.181 kb on - strand at 492.332 kb on - strand, within EX28DRAFT_0500 at 492.332 kb on - strand, within EX28DRAFT_0500 at 492.341 kb on + strand, within EX28DRAFT_0500 at 492.342 kb on - strand, within EX28DRAFT_0500 at 492.342 kb on - strand, within EX28DRAFT_0500 at 492.473 kb on + strand, within EX28DRAFT_0500 at 492.474 kb on - strand, within EX28DRAFT_0500 at 492.474 kb on - strand, within EX28DRAFT_0500 at 492.542 kb on + strand, within EX28DRAFT_0500 at 492.543 kb on - strand, within EX28DRAFT_0500 at 492.544 kb on + strand, within EX28DRAFT_0500 at 492.549 kb on - strand, within EX28DRAFT_0500 at 492.629 kb on - strand, within EX28DRAFT_0500 at 493.152 kb on - strand, within EX28DRAFT_0501 at 493.385 kb on - strand, within EX28DRAFT_0501 at 493.439 kb on + strand at 493.451 kb on + strand at 493.461 kb on + strand at 493.461 kb on + strand at 493.461 kb on + strand at 493.461 kb on + strand at 493.461 kb on + strand at 493.552 kb on - strand at 493.562 kb on - strand at 493.603 kb on + strand, within EX28DRAFT_0502 at 493.603 kb on + strand, within EX28DRAFT_0502 at 493.603 kb on + strand, within EX28DRAFT_0502 at 493.603 kb on + strand, within EX28DRAFT_0502 at 493.604 kb on - strand, within EX28DRAFT_0502 at 493.699 kb on - strand, within EX28DRAFT_0502 at 493.699 kb on - strand, within EX28DRAFT_0502
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 491,272 - EX28DRAFT_0499 0.31 -0.5 491,790 - EX28DRAFT_0499 0.73 -0.4 491,790 - EX28DRAFT_0499 0.73 +0.1 491,815 + EX28DRAFT_0499 0.75 +0.1 492,103 - +2.5 492,103 - +0.8 492,130 + -0.2 492,181 - -0.8 492,332 - EX28DRAFT_0500 0.27 +2.0 492,332 - EX28DRAFT_0500 0.27 +2.4 492,341 + EX28DRAFT_0500 0.28 +0.2 492,342 - EX28DRAFT_0500 0.28 -1.7 492,342 - EX28DRAFT_0500 0.28 -0.0 492,473 + EX28DRAFT_0500 0.46 +0.5 492,474 - EX28DRAFT_0500 0.46 +3.4 492,474 - EX28DRAFT_0500 0.46 +0.9 492,542 + EX28DRAFT_0500 0.55 -0.8 492,543 - EX28DRAFT_0500 0.55 +0.1 492,544 + EX28DRAFT_0500 0.55 +0.6 492,549 - EX28DRAFT_0500 0.56 -0.6 492,629 - EX28DRAFT_0500 0.67 +0.4 493,152 - EX28DRAFT_0501 0.47 -0.7 493,385 - EX28DRAFT_0501 0.90 +1.5 493,439 + +0.3 493,451 + -1.0 493,461 + +0.1 493,461 + -0.3 493,461 + -2.2 493,461 + -1.3 493,461 + +0.1 493,552 - -1.8 493,562 - -1.3 493,603 + EX28DRAFT_0502 0.12 +0.1 493,603 + EX28DRAFT_0502 0.12 +0.1 493,603 + EX28DRAFT_0502 0.12 -0.5 493,603 + EX28DRAFT_0502 0.12 +0.3 493,604 - EX28DRAFT_0502 0.12 +0.3 493,699 - EX28DRAFT_0502 0.21 +0.3 493,699 - EX28DRAFT_0502 0.21 -0.1
Or see this region's nucleotide sequence