Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0498

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0496 and EX28DRAFT_0497 overlap by 1 nucleotidesEX28DRAFT_0497 and EX28DRAFT_0498 overlap by 4 nucleotidesEX28DRAFT_0498 and EX28DRAFT_0499 overlap by 26 nucleotides EX28DRAFT_0496: EX28DRAFT_0496 - colanic acid biosynthesis glycosyl transferase WcaA, at 488,351 to 489,214 _0496 EX28DRAFT_0497: EX28DRAFT_0497 - colanic acid biosynthesis acetyltransferase WcaB, at 489,214 to 489,705 _0497 EX28DRAFT_0498: EX28DRAFT_0498 - colanic acid biosynthesis glycosyl transferase WcaC, at 489,702 to 490,919 _0498 EX28DRAFT_0499: EX28DRAFT_0499 - putative colanic acid polymerase WcaD, at 490,894 to 492,114 _0499 Position (kb) 489 490 491Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 488.732 kb on + strand, within EX28DRAFT_0496at 488.744 kb on + strand, within EX28DRAFT_0496at 488.744 kb on + strand, within EX28DRAFT_0496at 488.745 kb on - strand, within EX28DRAFT_0496at 488.745 kb on - strand, within EX28DRAFT_0496at 488.745 kb on - strand, within EX28DRAFT_0496at 488.808 kb on - strand, within EX28DRAFT_0496at 488.825 kb on + strand, within EX28DRAFT_0496at 488.825 kb on + strand, within EX28DRAFT_0496at 488.919 kb on - strand, within EX28DRAFT_0496at 488.949 kb on - strand, within EX28DRAFT_0496at 489.094 kb on + strand, within EX28DRAFT_0496at 489.130 kb on + strandat 489.130 kb on + strandat 489.212 kb on + strandat 489.212 kb on + strandat 489.213 kb on - strandat 489.330 kb on + strand, within EX28DRAFT_0497at 489.606 kb on + strand, within EX28DRAFT_0497at 489.609 kb on + strand, within EX28DRAFT_0497at 489.699 kb on + strandat 489.699 kb on + strandat 489.700 kb on - strandat 489.700 kb on - strandat 489.720 kb on - strandat 489.720 kb on - strandat 489.725 kb on - strandat 489.806 kb on + strandat 490.017 kb on + strand, within EX28DRAFT_0498at 490.017 kb on + strand, within EX28DRAFT_0498at 490.018 kb on - strand, within EX28DRAFT_0498at 490.018 kb on - strand, within EX28DRAFT_0498at 490.136 kb on + strand, within EX28DRAFT_0498at 490.163 kb on + strand, within EX28DRAFT_0498at 490.163 kb on + strand, within EX28DRAFT_0498at 490.284 kb on - strand, within EX28DRAFT_0498at 490.284 kb on - strand, within EX28DRAFT_0498at 490.349 kb on + strand, within EX28DRAFT_0498at 490.369 kb on + strand, within EX28DRAFT_0498at 490.652 kb on + strand, within EX28DRAFT_0498at 490.893 kb on + strandat 490.893 kb on + strandat 490.894 kb on - strandat 490.921 kb on + strandat 490.922 kb on - strandat 490.942 kb on + strandat 490.943 kb on - strandat 490.943 kb on - strandat 491.029 kb on + strand, within EX28DRAFT_0499at 491.029 kb on + strand, within EX28DRAFT_0499at 491.101 kb on + strand, within EX28DRAFT_0499at 491.102 kb on - strand, within EX28DRAFT_0499at 491.272 kb on - strand, within EX28DRAFT_0499at 491.790 kb on - strand, within EX28DRAFT_0499at 491.790 kb on - strand, within EX28DRAFT_0499at 491.815 kb on + strand, within EX28DRAFT_0499

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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488,732 + EX28DRAFT_0496 0.44 -3.3
488,744 + EX28DRAFT_0496 0.45 +0.8
488,744 + EX28DRAFT_0496 0.45 -0.7
488,745 - EX28DRAFT_0496 0.46 +0.7
488,745 - EX28DRAFT_0496 0.46 -0.1
488,745 - EX28DRAFT_0496 0.46 +0.5
488,808 - EX28DRAFT_0496 0.53 +0.9
488,825 + EX28DRAFT_0496 0.55 +0.2
488,825 + EX28DRAFT_0496 0.55 -0.1
488,919 - EX28DRAFT_0496 0.66 -0.1
488,949 - EX28DRAFT_0496 0.69 -1.6
489,094 + EX28DRAFT_0496 0.86 +3.4
489,130 + -0.9
489,130 + +1.2
489,212 + -1.8
489,212 + +0.3
489,213 - +2.5
489,330 + EX28DRAFT_0497 0.24 -1.3
489,606 + EX28DRAFT_0497 0.80 +0.9
489,609 + EX28DRAFT_0497 0.80 +1.0
489,699 + -0.1
489,699 + -0.0
489,700 - -0.2
489,700 - -0.2
489,720 - +1.6
489,720 - +0.2
489,725 - +1.0
489,806 + -0.3
490,017 + EX28DRAFT_0498 0.26 -0.8
490,017 + EX28DRAFT_0498 0.26 -0.0
490,018 - EX28DRAFT_0498 0.26 -2.2
490,018 - EX28DRAFT_0498 0.26 -2.1
490,136 + EX28DRAFT_0498 0.36 -0.6
490,163 + EX28DRAFT_0498 0.38 -1.3
490,163 + EX28DRAFT_0498 0.38 +0.4
490,284 - EX28DRAFT_0498 0.48 -1.1
490,284 - EX28DRAFT_0498 0.48 -1.6
490,349 + EX28DRAFT_0498 0.53 +0.2
490,369 + EX28DRAFT_0498 0.55 -1.0
490,652 + EX28DRAFT_0498 0.78 +1.0
490,893 + +0.7
490,893 + +0.4
490,894 - +0.4
490,921 + +0.2
490,922 - -2.3
490,942 + +0.3
490,943 - +1.1
490,943 - +1.1
491,029 + EX28DRAFT_0499 0.11 +1.0
491,029 + EX28DRAFT_0499 0.11 +2.7
491,101 + EX28DRAFT_0499 0.17 -2.0
491,102 - EX28DRAFT_0499 0.17 -1.6
491,272 - EX28DRAFT_0499 0.31 -0.5
491,790 - EX28DRAFT_0499 0.73 -0.4
491,790 - EX28DRAFT_0499 0.73 +0.1
491,815 + EX28DRAFT_0499 0.75 +0.1

Or see this region's nucleotide sequence