Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0401

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0400 and EX28DRAFT_0401 are separated by 224 nucleotidesEX28DRAFT_0401 and EX28DRAFT_0402 are separated by 111 nucleotides EX28DRAFT_0400: EX28DRAFT_0400 - Amino acid transporters, at 375,065 to 376,534 _0400 EX28DRAFT_0401: EX28DRAFT_0401 - Outer membrane receptor for ferrienterochelin and colicins, at 376,759 to 378,729 _0401 EX28DRAFT_0402: EX28DRAFT_0402 - S-formylglutathione hydrolase, at 378,841 to 379,668 _0402 Position (kb) 376 377 378 379Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 375.798 kb on + strand, within EX28DRAFT_0400at 375.821 kb on + strand, within EX28DRAFT_0400at 375.821 kb on + strand, within EX28DRAFT_0400at 375.821 kb on + strand, within EX28DRAFT_0400at 375.822 kb on - strand, within EX28DRAFT_0400at 375.822 kb on - strand, within EX28DRAFT_0400at 375.891 kb on + strand, within EX28DRAFT_0400at 376.013 kb on + strand, within EX28DRAFT_0400at 376.014 kb on - strand, within EX28DRAFT_0400at 376.035 kb on - strand, within EX28DRAFT_0400at 376.066 kb on + strand, within EX28DRAFT_0400at 376.066 kb on + strand, within EX28DRAFT_0400at 376.175 kb on + strand, within EX28DRAFT_0400at 376.176 kb on - strand, within EX28DRAFT_0400at 376.214 kb on - strand, within EX28DRAFT_0400at 376.282 kb on + strand, within EX28DRAFT_0400at 376.373 kb on + strand, within EX28DRAFT_0400at 376.373 kb on + strand, within EX28DRAFT_0400at 376.373 kb on + strand, within EX28DRAFT_0400at 376.374 kb on - strand, within EX28DRAFT_0400at 376.374 kb on - strand, within EX28DRAFT_0400at 376.425 kb on - strandat 376.525 kb on + strandat 376.526 kb on - strandat 376.604 kb on - strandat 376.605 kb on + strandat 376.605 kb on + strandat 376.730 kb on + strandat 376.736 kb on + strandat 376.741 kb on - strandat 376.753 kb on + strandat 377.022 kb on - strand, within EX28DRAFT_0401at 377.025 kb on + strand, within EX28DRAFT_0401at 377.026 kb on - strand, within EX28DRAFT_0401at 377.047 kb on + strand, within EX28DRAFT_0401at 377.048 kb on - strand, within EX28DRAFT_0401at 377.220 kb on + strand, within EX28DRAFT_0401at 377.221 kb on - strand, within EX28DRAFT_0401at 377.305 kb on + strand, within EX28DRAFT_0401at 377.305 kb on + strand, within EX28DRAFT_0401at 377.305 kb on + strand, within EX28DRAFT_0401at 377.306 kb on - strand, within EX28DRAFT_0401at 377.306 kb on - strand, within EX28DRAFT_0401at 377.320 kb on + strand, within EX28DRAFT_0401at 377.323 kb on - strand, within EX28DRAFT_0401at 377.584 kb on + strand, within EX28DRAFT_0401at 377.585 kb on - strand, within EX28DRAFT_0401at 377.716 kb on + strand, within EX28DRAFT_0401at 377.716 kb on + strand, within EX28DRAFT_0401at 377.717 kb on - strand, within EX28DRAFT_0401at 377.720 kb on + strand, within EX28DRAFT_0401at 377.778 kb on + strand, within EX28DRAFT_0401at 377.824 kb on - strand, within EX28DRAFT_0401at 377.839 kb on + strand, within EX28DRAFT_0401at 377.840 kb on - strand, within EX28DRAFT_0401at 377.918 kb on + strand, within EX28DRAFT_0401at 377.919 kb on + strand, within EX28DRAFT_0401at 377.919 kb on + strand, within EX28DRAFT_0401at 377.920 kb on - strand, within EX28DRAFT_0401at 377.960 kb on - strand, within EX28DRAFT_0401at 378.133 kb on + strand, within EX28DRAFT_0401at 378.195 kb on + strand, within EX28DRAFT_0401at 378.259 kb on - strand, within EX28DRAFT_0401at 378.262 kb on + strand, within EX28DRAFT_0401at 378.262 kb on + strand, within EX28DRAFT_0401at 378.263 kb on - strand, within EX28DRAFT_0401at 378.263 kb on - strand, within EX28DRAFT_0401at 378.292 kb on - strand, within EX28DRAFT_0401at 378.304 kb on + strand, within EX28DRAFT_0401at 378.304 kb on + strand, within EX28DRAFT_0401at 378.304 kb on + strand, within EX28DRAFT_0401at 378.304 kb on + strand, within EX28DRAFT_0401at 378.388 kb on + strand, within EX28DRAFT_0401at 378.394 kb on + strand, within EX28DRAFT_0401at 378.395 kb on - strand, within EX28DRAFT_0401at 378.506 kb on - strand, within EX28DRAFT_0401at 378.520 kb on + strand, within EX28DRAFT_0401at 378.521 kb on - strand, within EX28DRAFT_0401at 378.606 kb on - strandat 378.673 kb on + strandat 378.679 kb on + strandat 378.719 kb on - strandat 378.720 kb on + strandat 378.720 kb on + strandat 378.721 kb on - strandat 378.760 kb on + strandat 378.760 kb on + strandat 378.760 kb on + strandat 378.760 kb on + strandat 378.761 kb on - strandat 378.761 kb on - strandat 378.885 kb on + strandat 378.902 kb on + strandat 378.902 kb on + strandat 378.903 kb on - strandat 378.903 kb on - strandat 378.906 kb on - strandat 378.906 kb on - strandat 379.319 kb on + strand, within EX28DRAFT_0402at 379.320 kb on - strand, within EX28DRAFT_0402at 379.325 kb on + strand, within EX28DRAFT_0402at 379.325 kb on + strand, within EX28DRAFT_0402at 379.325 kb on + strand, within EX28DRAFT_0402at 379.326 kb on - strand, within EX28DRAFT_0402at 379.326 kb on - strand, within EX28DRAFT_0402at 379.326 kb on - strand, within EX28DRAFT_0402at 379.458 kb on + strand, within EX28DRAFT_0402at 379.700 kb on - strandat 379.708 kb on + strandat 379.709 kb on - strandat 379.709 kb on - strandat 379.712 kb on - strandat 379.712 kb on - strandat 379.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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375,798 + EX28DRAFT_0400 0.50 +1.1
375,821 + EX28DRAFT_0400 0.51 -0.9
375,821 + EX28DRAFT_0400 0.51 -0.8
375,821 + EX28DRAFT_0400 0.51 +0.1
375,822 - EX28DRAFT_0400 0.51 +0.0
375,822 - EX28DRAFT_0400 0.51 -1.0
375,891 + EX28DRAFT_0400 0.56 +0.8
376,013 + EX28DRAFT_0400 0.64 -0.0
376,014 - EX28DRAFT_0400 0.65 +0.9
376,035 - EX28DRAFT_0400 0.66 -0.3
376,066 + EX28DRAFT_0400 0.68 -0.2
376,066 + EX28DRAFT_0400 0.68 +0.2
376,175 + EX28DRAFT_0400 0.76 -1.7
376,176 - EX28DRAFT_0400 0.76 -0.2
376,214 - EX28DRAFT_0400 0.78 +0.4
376,282 + EX28DRAFT_0400 0.83 +1.2
376,373 + EX28DRAFT_0400 0.89 +0.9
376,373 + EX28DRAFT_0400 0.89 -2.3
376,373 + EX28DRAFT_0400 0.89 +0.1
376,374 - EX28DRAFT_0400 0.89 -0.3
376,374 - EX28DRAFT_0400 0.89 +1.8
376,425 - +0.6
376,525 + +0.5
376,526 - -0.6
376,604 - +4.8
376,605 + -1.6
376,605 + -1.3
376,730 + +1.4
376,736 + +1.1
376,741 - +0.2
376,753 + +0.8
377,022 - EX28DRAFT_0401 0.13 +6.2
377,025 + EX28DRAFT_0401 0.13 -2.7
377,026 - EX28DRAFT_0401 0.14 +1.0
377,047 + EX28DRAFT_0401 0.15 +1.8
377,048 - EX28DRAFT_0401 0.15 +0.3
377,220 + EX28DRAFT_0401 0.23 -0.1
377,221 - EX28DRAFT_0401 0.23 -1.3
377,305 + EX28DRAFT_0401 0.28 +1.4
377,305 + EX28DRAFT_0401 0.28 +0.4
377,305 + EX28DRAFT_0401 0.28 -0.2
377,306 - EX28DRAFT_0401 0.28 +2.2
377,306 - EX28DRAFT_0401 0.28 -1.9
377,320 + EX28DRAFT_0401 0.28 +0.5
377,323 - EX28DRAFT_0401 0.29 +1.1
377,584 + EX28DRAFT_0401 0.42 +0.5
377,585 - EX28DRAFT_0401 0.42 +0.5
377,716 + EX28DRAFT_0401 0.49 -1.8
377,716 + EX28DRAFT_0401 0.49 +0.3
377,717 - EX28DRAFT_0401 0.49 +0.7
377,720 + EX28DRAFT_0401 0.49 +0.6
377,778 + EX28DRAFT_0401 0.52 -0.7
377,824 - EX28DRAFT_0401 0.54 -0.8
377,839 + EX28DRAFT_0401 0.55 -0.4
377,840 - EX28DRAFT_0401 0.55 -0.7
377,918 + EX28DRAFT_0401 0.59 -0.2
377,919 + EX28DRAFT_0401 0.59 +1.3
377,919 + EX28DRAFT_0401 0.59 -0.2
377,920 - EX28DRAFT_0401 0.59 +0.4
377,960 - EX28DRAFT_0401 0.61 +0.8
378,133 + EX28DRAFT_0401 0.70 +0.5
378,195 + EX28DRAFT_0401 0.73 +0.5
378,259 - EX28DRAFT_0401 0.76 +0.2
378,262 + EX28DRAFT_0401 0.76 -0.3
378,262 + EX28DRAFT_0401 0.76 +1.4
378,263 - EX28DRAFT_0401 0.76 +0.6
378,263 - EX28DRAFT_0401 0.76 +1.5
378,292 - EX28DRAFT_0401 0.78 +0.3
378,304 + EX28DRAFT_0401 0.78 -1.0
378,304 + EX28DRAFT_0401 0.78 +2.0
378,304 + EX28DRAFT_0401 0.78 -0.4
378,304 + EX28DRAFT_0401 0.78 -0.2
378,388 + EX28DRAFT_0401 0.83 -0.4
378,394 + EX28DRAFT_0401 0.83 -0.5
378,395 - EX28DRAFT_0401 0.83 +0.1
378,506 - EX28DRAFT_0401 0.89 -0.8
378,520 + EX28DRAFT_0401 0.89 -1.8
378,521 - EX28DRAFT_0401 0.89 +0.3
378,606 - +1.0
378,673 + +0.6
378,679 + -0.3
378,719 - +0.8
378,720 + +2.3
378,720 + -1.3
378,721 - +1.8
378,760 + +2.1
378,760 + +1.3
378,760 + -0.9
378,760 + -0.6
378,761 - -0.1
378,761 - -1.2
378,885 + +0.8
378,902 + -0.1
378,902 + -1.2
378,903 - -0.8
378,903 - +0.1
378,906 - +1.1
378,906 - +0.1
379,319 + EX28DRAFT_0402 0.58 -1.6
379,320 - EX28DRAFT_0402 0.58 -0.1
379,325 + EX28DRAFT_0402 0.58 +0.0
379,325 + EX28DRAFT_0402 0.58 -0.4
379,325 + EX28DRAFT_0402 0.58 -0.4
379,326 - EX28DRAFT_0402 0.59 -0.7
379,326 - EX28DRAFT_0402 0.59 -1.0
379,326 - EX28DRAFT_0402 0.59 -0.2
379,458 + EX28DRAFT_0402 0.75 -0.4
379,700 - +0.7
379,708 + -0.6
379,709 - +1.4
379,709 - -0.7
379,712 - -0.1
379,712 - -1.0
379,712 - +1.9

Or see this region's nucleotide sequence