Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0230 and EX28DRAFT_0231 are separated by 43 nucleotides EX28DRAFT_0231 and EX28DRAFT_0232 are separated by 348 nucleotides
EX28DRAFT_0230: EX28DRAFT_0230 - FOG: EAL domain, at 179,512 to 181,668
_0230
EX28DRAFT_0231: EX28DRAFT_0231 - nucleoside transporter, at 181,712 to 182,899
_0231
EX28DRAFT_0232: EX28DRAFT_0232 - NRAMP (natural resistance-associated macrophage protein) metal ion transporters, at 183,248 to 184,486
_0232
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 180.718 kb on - strand, within EX28DRAFT_0230 at 180.954 kb on + strand, within EX28DRAFT_0230 at 180.986 kb on + strand, within EX28DRAFT_0230 at 181.084 kb on - strand, within EX28DRAFT_0230 at 181.084 kb on - strand, within EX28DRAFT_0230 at 181.126 kb on - strand, within EX28DRAFT_0230 at 181.126 kb on - strand, within EX28DRAFT_0230 at 181.126 kb on - strand, within EX28DRAFT_0230 at 181.126 kb on - strand, within EX28DRAFT_0230 at 181.267 kb on + strand, within EX28DRAFT_0230 at 181.385 kb on + strand, within EX28DRAFT_0230 at 181.385 kb on + strand, within EX28DRAFT_0230 at 181.414 kb on + strand, within EX28DRAFT_0230 at 181.414 kb on + strand, within EX28DRAFT_0230 at 181.415 kb on - strand, within EX28DRAFT_0230 at 181.415 kb on - strand, within EX28DRAFT_0230 at 181.449 kb on + strand, within EX28DRAFT_0230 at 181.449 kb on + strand, within EX28DRAFT_0230 at 181.467 kb on + strand at 181.467 kb on + strand at 181.470 kb on + strand at 181.482 kb on + strand at 181.483 kb on - strand at 181.491 kb on + strand at 181.521 kb on + strand at 181.612 kb on + strand at 181.667 kb on - strand at 181.732 kb on + strand at 181.733 kb on - strand at 181.826 kb on - strand at 181.826 kb on - strand at 181.841 kb on - strand, within EX28DRAFT_0231 at 181.982 kb on - strand, within EX28DRAFT_0231 at 182.038 kb on - strand, within EX28DRAFT_0231 at 182.071 kb on + strand, within EX28DRAFT_0231 at 182.176 kb on - strand, within EX28DRAFT_0231 at 182.176 kb on - strand, within EX28DRAFT_0231 at 182.176 kb on - strand, within EX28DRAFT_0231 at 182.322 kb on + strand, within EX28DRAFT_0231 at 182.322 kb on + strand, within EX28DRAFT_0231 at 182.322 kb on + strand, within EX28DRAFT_0231 at 182.323 kb on - strand, within EX28DRAFT_0231 at 182.323 kb on - strand, within EX28DRAFT_0231 at 182.323 kb on - strand, within EX28DRAFT_0231 at 182.323 kb on - strand, within EX28DRAFT_0231 at 182.323 kb on - strand, within EX28DRAFT_0231 at 182.323 kb on - strand, within EX28DRAFT_0231 at 182.344 kb on + strand, within EX28DRAFT_0231 at 182.346 kb on + strand, within EX28DRAFT_0231 at 182.346 kb on + strand, within EX28DRAFT_0231 at 182.346 kb on + strand, within EX28DRAFT_0231 at 182.347 kb on - strand, within EX28DRAFT_0231 at 182.347 kb on - strand, within EX28DRAFT_0231 at 182.347 kb on - strand, within EX28DRAFT_0231 at 182.347 kb on - strand, within EX28DRAFT_0231 at 182.347 kb on - strand, within EX28DRAFT_0231 at 182.347 kb on - strand, within EX28DRAFT_0231 at 182.360 kb on - strand, within EX28DRAFT_0231 at 182.400 kb on + strand, within EX28DRAFT_0231 at 182.401 kb on - strand, within EX28DRAFT_0231 at 182.432 kb on - strand, within EX28DRAFT_0231 at 182.438 kb on - strand, within EX28DRAFT_0231 at 182.438 kb on - strand, within EX28DRAFT_0231 at 182.439 kb on + strand, within EX28DRAFT_0231 at 182.899 kb on + strand at 182.899 kb on + strand at 182.988 kb on + strand at 183.042 kb on + strand at 183.062 kb on + strand at 183.063 kb on - strand at 183.113 kb on - strand at 183.113 kb on - strand at 183.143 kb on + strand at 183.168 kb on + strand at 183.232 kb on + strand at 183.341 kb on + strand at 183.342 kb on - strand at 183.342 kb on - strand at 183.356 kb on - strand at 183.398 kb on - strand, within EX28DRAFT_0232 at 183.398 kb on - strand, within EX28DRAFT_0232 at 183.802 kb on + strand, within EX28DRAFT_0232 at 183.810 kb on + strand, within EX28DRAFT_0232
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 180,718 - EX28DRAFT_0230 0.56 -1.4 180,954 + EX28DRAFT_0230 0.67 +0.5 180,986 + EX28DRAFT_0230 0.68 +0.9 181,084 - EX28DRAFT_0230 0.73 +0.4 181,084 - EX28DRAFT_0230 0.73 +1.8 181,126 - EX28DRAFT_0230 0.75 +2.5 181,126 - EX28DRAFT_0230 0.75 -0.4 181,126 - EX28DRAFT_0230 0.75 +1.1 181,126 - EX28DRAFT_0230 0.75 +0.5 181,267 + EX28DRAFT_0230 0.81 +0.4 181,385 + EX28DRAFT_0230 0.87 -1.1 181,385 + EX28DRAFT_0230 0.87 -0.4 181,414 + EX28DRAFT_0230 0.88 -1.7 181,414 + EX28DRAFT_0230 0.88 -1.6 181,415 - EX28DRAFT_0230 0.88 +0.7 181,415 - EX28DRAFT_0230 0.88 +0.5 181,449 + EX28DRAFT_0230 0.90 +0.1 181,449 + EX28DRAFT_0230 0.90 +0.5 181,467 + +0.9 181,467 + +0.8 181,470 + +0.2 181,482 + +1.2 181,483 - +0.3 181,491 + +0.4 181,521 + +0.3 181,612 + -0.5 181,667 - +0.7 181,732 + +0.9 181,733 - -0.3 181,826 - -0.1 181,826 - +4.6 181,841 - EX28DRAFT_0231 0.11 +1.0 181,982 - EX28DRAFT_0231 0.23 +0.6 182,038 - EX28DRAFT_0231 0.27 -0.3 182,071 + EX28DRAFT_0231 0.30 +2.9 182,176 - EX28DRAFT_0231 0.39 +0.5 182,176 - EX28DRAFT_0231 0.39 +2.0 182,176 - EX28DRAFT_0231 0.39 +0.2 182,322 + EX28DRAFT_0231 0.51 +0.4 182,322 + EX28DRAFT_0231 0.51 +4.2 182,322 + EX28DRAFT_0231 0.51 -1.5 182,323 - EX28DRAFT_0231 0.51 -1.0 182,323 - EX28DRAFT_0231 0.51 +1.9 182,323 - EX28DRAFT_0231 0.51 +1.9 182,323 - EX28DRAFT_0231 0.51 -1.6 182,323 - EX28DRAFT_0231 0.51 +0.2 182,323 - EX28DRAFT_0231 0.51 -0.5 182,344 + EX28DRAFT_0231 0.53 +0.6 182,346 + EX28DRAFT_0231 0.53 +0.5 182,346 + EX28DRAFT_0231 0.53 -1.7 182,346 + EX28DRAFT_0231 0.53 -0.3 182,347 - EX28DRAFT_0231 0.53 +0.3 182,347 - EX28DRAFT_0231 0.53 +0.4 182,347 - EX28DRAFT_0231 0.53 +0.3 182,347 - EX28DRAFT_0231 0.53 +1.0 182,347 - EX28DRAFT_0231 0.53 -1.9 182,347 - EX28DRAFT_0231 0.53 -0.4 182,360 - EX28DRAFT_0231 0.55 -0.0 182,400 + EX28DRAFT_0231 0.58 +1.4 182,401 - EX28DRAFT_0231 0.58 +0.5 182,432 - EX28DRAFT_0231 0.61 -2.5 182,438 - EX28DRAFT_0231 0.61 -1.9 182,438 - EX28DRAFT_0231 0.61 -0.3 182,439 + EX28DRAFT_0231 0.61 +0.6 182,899 + -0.0 182,899 + -0.4 182,988 + +0.4 183,042 + +1.0 183,062 + +0.5 183,063 - +0.7 183,113 - -0.6 183,113 - +0.9 183,143 + +0.2 183,168 + -0.6 183,232 + +4.4 183,341 + +2.0 183,342 - +1.2 183,342 - -0.2 183,356 - -0.6 183,398 - EX28DRAFT_0232 0.12 +1.0 183,398 - EX28DRAFT_0232 0.12 -0.3 183,802 + EX28DRAFT_0232 0.45 +0.1 183,810 + EX28DRAFT_0232 0.45 +0.0
Or see this region's nucleotide sequence